Variant report

Variant	rs17105810
Chromosome Location	chr14:69007232-69007233
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:69001801..69004663-chr14:69006865..69008433,2	MCF-7	breast:
2	chr14:69003922..69007873-chr14:69256897..69260047,3	MCF-7	breast:
3	chr14:69006886..69009005-chr14:69017187..69019247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10130177	1.00[CEU][hapmap];1.00[CHB][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10134240	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10137367	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147979	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10148391	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483810	1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs10483811	0.94[CEU][hapmap];1.00[CHB][hapmap];0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10483814	1.00[CHB][hapmap]
rs11849344	0.94[CEU][hapmap];1.00[CHB][hapmap];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105812	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105828	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17105829	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17829180	1.00[CHB][hapmap]
rs17829192	1.00[CHB][hapmap]
rs28377700	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2842339	1.00[CHB][hapmap]
rs28454359	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28492919	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28558877	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs28671277	0.92[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59404246	1.00[ASN][1000 genomes]
rs6573841	0.83[CEU][hapmap];0.88[EUR][1000 genomes]
rs72727502	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72729521	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8016149	0.90[CEU][hapmap];0.85[EUR][1000 genomes]
rs8017678	1.00[CEU][hapmap];1.00[CHB][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9323515	0.94[CEU][hapmap];1.00[CHB][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv869154	chr14:68366754-69041768	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	19 gene(s)	inside rSNPs	diseases
2	nsv832822	chr14:68874640-69060272	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1048064	chr14:68991041-69012766	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:68996200-69007800	Weak transcription	Stomach Mucosa	stomach
2	chr14:69002400-69016600	Weak transcription	Gastric	stomach
3	chr14:69003000-69007800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr14:69003000-69007800	Weak transcription	Hela-S3	cervix
5	chr14:69003000-69008000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr14:69003000-69009000	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr14:69003200-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:69003600-69007800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr14:69003600-69008000	Weak transcription	HMEC	breast
10	chr14:69003600-69009000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:69003600-69009000	Weak transcription	NHEK	skin
12	chr14:69004400-69008600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
13	chr14:69004600-69008400	Enhancers	Brain Germinal Matrix	brain
14	chr14:69004600-69009800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr14:69004600-69010600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr14:69004800-69007400	Enhancers	Psoas Muscle	Psoas
17	chr14:69004800-69008200	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr14:69004800-69008600	Enhancers	Fetal Muscle Leg	muscle
19	chr14:69005000-69007800	Enhancers	Brain Anterior Caudate	brain
20	chr14:69005000-69008400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:69005000-69008800	Enhancers	Colon Smooth Muscle	Colon
22	chr14:69005000-69008800	Enhancers	Fetal Stomach	stomach
23	chr14:69005000-69010400	Weak transcription	Pancreas	Pancrea
24	chr14:69005000-69013400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr14:69005000-69015000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr14:69005400-69008400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr14:69005600-69007400	Weak transcription	Fetal Thymus	thymus
28	chr14:69005800-69008000	Weak transcription	Adipose Nuclei	Adipose
29	chr14:69006000-69014600	Enhancers	NHDF-Ad	bronchial
30	chr14:69006200-69007400	Enhancers	Fetal Heart	heart
31	chr14:69006200-69010400	Weak transcription	Aorta	Aorta
32	chr14:69006200-69012000	Weak transcription	Lung	lung
33	chr14:69006400-69008000	Weak transcription	Fetal Intestine Small	intestine
34	chr14:69006400-69013200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr14:69006400-69013800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr14:69006600-69007800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:69006600-69008000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:69006600-69008400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr14:69006600-69008400	Enhancers	Breast Myoepithelial Primary Cells	Breast
40	chr14:69006800-69007800	Weak transcription	Cortex derived primary cultured neurospheres	brain
41	chr14:69006800-69007800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
42	chr14:69006800-69007800	Weak transcription	Fetal Muscle Trunk	muscle
43	chr14:69006800-69007800	Weak transcription	Ovary	ovary
44	chr14:69006800-69007800	Weak transcription	Rectal Smooth Muscle	rectum
45	chr14:69006800-69008000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr14:69006800-69008000	Weak transcription	Right Atrium	heart
47	chr14:69006800-69008000	Weak transcription	Spleen	Spleen
48	chr14:69006800-69008200	Weak transcription	NHLF	lung
49	chr14:69006800-69009200	Weak transcription	Fetal Brain Male	brain
50	chr14:69006800-69010200	Weak transcription	Fetal Lung	lung

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