Variant report

Variant	rs61986369
Chromosome Location	chr14:106094076-106094077
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106085106-106094133	GM12892	blood:	n/a	n/a
2	POLR2A	chr14:106084800-106094139	GM12892	blood:	n/a	n/a
3	POLR2A	chr14:106084957-106094154	GM12892	blood:	n/a	n/a
4	POLR2A	chr14:106085083-106094190	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:106094051-106094101	HRE	kidney:	n/a
2	chr14:106094051-106094101	SK-N-SH_RA	brain:	n/a
3	chr14:106094051-106094101	H1-hESC	embryonic stem cell:	embryo
4	chr14:106094051-106094101	HNPCEpiC	eye:	n/a
5	chr14:106094051-106094101	HEEpiC	esophagus:	n/a
6	chr14:106094051-106094101	AG04449	skin:	fetal
7	chr14:106094051-106094101	HIPEpiC	eye:	n/a
8	chr14:106094051-106094101	HL-60	blood:	n/a
9	chr14:106094051-106094101	ProgFib	skin:	n/a
10	chr14:106094051-106094101	HUVEC	blood vessel:	n/a
11	chr14:106094051-106094101	U87	brain:	n/a
12	chr14:106094051-106094101	AG10803	skin:	n/a
13	chr14:106094051-106094101	HPAEpiC	pulmonary alveolar:	n/a
14	chr14:106094051-106094101	NH-A	brain:	n/a
15	chr14:106094051-106094101	SK-N-SH	brain:	n/a
16	chr14:106094051-106094101	RPTEC	kidney:	n/a
17	chr14:106094051-106094101	AG09309	skin:	n/a
18	chr14:106094051-106094101	NHDF-neo	bronchial:	n/a
19	chr14:106094051-106094101	GM12892	blood:	n/a
20	chr14:106094051-106094101	SK-N-MC	brain:	n/a
21	chr14:106094051-106094101	A549	lung:	n/a
22	chr14:106094051-106094101	Hela-S3	cervix:	n/a
23	chr14:106094051-106094101	HCM	heart:	n/a
24	chr14:106094051-106094101	GM12878	blood:	n/a
25	chr14:106094051-106094101	SKMC	muscle:	n/a
26	chr14:106094051-106094101	PFSK-1	brain:	n/a
27	chr14:106094051-106094101	AG04450	lung:	fetal
28	chr14:106094051-106094101	HMEC	breast:	n/a
29	chr14:106094051-106094101	HCF	heart:	n/a
30	chr14:106094051-106094101	MCF10A-Er-Src	breast:	n/a
31	chr14:106094051-106094101	ovcar-3	ovarian:	n/a
32	chr14:106094051-106094101	PrEC	prostate:	n/a
33	chr14:106094051-106094101	HRPEpiC	eye:	n/a
34	chr14:106094051-106094101	HEK293	kidney:	embryo
35	chr14:106094051-106094101	GM06990	blood:	n/a
36	chr14:106094051-106094101	ECC-1	luminal epithelium:	n/a
37	chr14:106094051-106094101	NHBE	bronchial:	n/a
38	chr14:106094051-106094101	GM19239	blood:	n/a
39	chr14:106094051-106094101	HAEpiC	amniotic membrane:	n/a
40	chr14:106094051-106094101	SAEC	small airway:	n/a
41	chr14:106094051-106094101	HCT-116	colon:	n/a
42	chr14:106094051-106094101	K562	blood:	n/a
43	chr14:106094051-106094101	MCF-7	breast:	n/a
44	chr14:106094051-106094101	NB4	blood:	n/a
45	chr14:106094051-106094101	AoSMC	blood vessel:	n/a
46	chr14:106094051-106094101	Hepatocyte	liver:	n/a
47	chr14:106094051-106094101	HCPEpiC	choroid plexus:	n/a
48	chr14:106094051-106094101	BJ	skin:	n/a
49	chr14:106094051-106094101	LNCaP	prostate:	n/a
50	chr14:106094051-106094101	HepG2	liver:	n/a

No data

Variant related genes	Relation type
IGHG4	TF binding region
IGHG4	CpG island

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs61986370	0.92[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61986373	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106088800-106095400	Weak transcription	Spleen	Spleen
2	chr14:106090000-106097200	Weak transcription	Esophagus	oesophagus
3	chr14:106093600-106095000	Enhancers	Liver	Liver
4	chr14:106093600-106098600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:106093800-106097600	Enhancers	Primary B cells from peripheral blood	blood

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