Variant report

Variant	rs61986373
Chromosome Location	chr14:106094160-106094161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:1)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:1 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106085083-106094190	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:106094144-106094194	AG04449	skin:	fetal
2	chr14:106094144-106094194	GM12891	blood:	n/a
3	chr14:106094144-106094194	AG09319	gingival:	n/a
4	chr14:106094144-106094194	SK-N-MC	brain:	n/a
5	chr14:106094144-106094194	HCM	heart:	n/a
6	chr14:106094144-106094194	HNPCEpiC	eye:	n/a
7	chr14:106094144-106094194	AG04450	lung:	fetal
8	chr14:106094144-106094194	HepG2	liver:	n/a
9	chr14:106094144-106094194	HUVEC	blood vessel:	n/a
10	chr14:106094144-106094194	BE2_C	brain:	n/a
11	chr14:106094144-106094194	PFSK-1	brain:	n/a
12	chr14:106094144-106094194	HCPEpiC	choroid plexus:	n/a
13	chr14:106094144-106094194	NH-A	brain:	n/a
14	chr14:106094144-106094194	GM12878	blood:	n/a
15	chr14:106094144-106094194	SAEC	small airway:	n/a
16	chr14:106094144-106094194	BJ	skin:	n/a
17	chr14:106094144-106094194	NB4	blood:	n/a
18	chr14:106094144-106094194	AG10803	skin:	n/a
19	chr14:106094144-106094194	MCF-7	breast:	n/a
20	chr14:106094144-106094194	HPAEpiC	pulmonary alveolar:	n/a
21	chr14:106094144-106094194	LNCaP	prostate:	n/a
22	chr14:106094144-106094194	HRCEpiC	kidney:	n/a
23	chr14:106094144-106094194	HIPEpiC	eye:	n/a
24	chr14:106094144-106094194	NT2-D1	testis:	n/a
25	chr14:106094144-106094194	RPTEC	kidney:	n/a
26	chr14:106094144-106094194	HCF	heart:	n/a
27	chr14:106094144-106094194	ProgFib	skin:	n/a
28	chr14:106094144-106094194	U87	brain:	n/a
29	chr14:106094144-106094194	GM06990	blood:	n/a
30	chr14:106094144-106094194	A549	lung:	n/a
31	chr14:106094144-106094194	IMR90	lung:	fetal
32	chr14:106094144-106094194	H1-hESC	embryonic stem cell:	embryo
33	chr14:106094144-106094194	SK-N-SH_RA	brain:	n/a
34	chr14:106094144-106094194	HRPEpiC	eye:	n/a
35	chr14:106094144-106094194	GM12892	blood:	n/a
36	chr14:106094144-106094194	GM19239	blood:	n/a
37	chr14:106094144-106094194	HCT-116	colon:	n/a
38	chr14:106094144-106094194	Hepatocyte	liver:	n/a
39	chr14:106094144-106094194	HRE	kidney:	n/a
40	chr14:106094144-106094194	HEEpiC	esophagus:	n/a
41	chr14:106094144-106094194	Hela-S3	cervix:	n/a
42	chr14:106094144-106094194	NHBE	bronchial:	n/a
43	chr14:106094144-106094194	Caco-2	colon:	n/a
44	chr14:106094144-106094194	NHDF-neo	bronchial:	n/a
45	chr14:106094144-106094194	SKMC	muscle:	n/a
46	chr14:106094144-106094194	HMEC	breast:	n/a
47	chr14:106094144-106094194	PANC-1	pancreas:	n/a
48	chr14:106094144-106094194	CMK	blood:	n/a
49	chr14:106094144-106094194	PrEC	prostate:	n/a
50	chr14:106094144-106094194	AoSMC	blood vessel:	n/a

No data

Variant related genes	Relation type
IGHG4	TF binding region
IGHG4	CpG island

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10136838	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10137020	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11628683	0.83[ASN][1000 genomes]
rs4983479	0.80[EUR][1000 genomes]
rs61986369	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61986370	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106088800-106095400	Weak transcription	Spleen	Spleen
2	chr14:106090000-106097200	Weak transcription	Esophagus	oesophagus
3	chr14:106093600-106095000	Enhancers	Liver	Liver
4	chr14:106093600-106098600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:106093800-106097600	Enhancers	Primary B cells from peripheral blood	blood

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