Variant report

Variant	rs11628683
Chromosome Location	chr14:106089174-106089175
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10136838	0.92[ASN][1000 genomes]
rs10137020	0.92[ASN][1000 genomes]
rs10162570	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11850206	0.88[ASN][1000 genomes]
rs12232113	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs12232184	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs2516751	1.00[CHB][hapmap]
rs35035896	0.81[EUR][1000 genomes]
rs4983475	0.85[ASN][1000 genomes]
rs56133431	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61985623	0.86[ASN][1000 genomes]
rs61986373	0.83[ASN][1000 genomes]
rs62637720	0.83[ASN][1000 genomes]
rs7158619	0.85[CHB][hapmap]
rs8015545	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106087000-106089600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:106087800-106089200	Enhancers	Stomach Smooth Muscle	stomach
3	chr14:106087800-106089800	Enhancers	Placenta	Placenta
4	chr14:106087800-106089800	Enhancers	Pancreas	Pancrea
5	chr14:106087800-106090200	Enhancers	Liver	Liver
6	chr14:106088000-106090000	Enhancers	Esophagus	oesophagus
7	chr14:106088800-106089400	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:106088800-106095400	Weak transcription	Spleen	Spleen
9	chr14:106089000-106089200	Bivalent Enhancer	Primary B cells from peripheral blood	blood
10	chr14:106089000-106089400	Enhancers	Right Ventricle	heart

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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