Variant report

Variant	rs11850206
Chromosome Location	chr14:106085890-106085891
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10136838	0.84[ASN][1000 genomes]
rs10137020	0.84[ASN][1000 genomes]
rs10162570	0.85[ASN][1000 genomes]
rs11623609	0.90[AFR][1000 genomes]
rs11628683	0.88[ASN][1000 genomes]
rs11845835	0.87[AFR][1000 genomes]
rs28719009	0.90[AFR][1000 genomes]
rs4983475	0.94[ASN][1000 genomes]
rs61985562	0.85[AFR][1000 genomes]
rs61985623	0.84[ASN][1000 genomes]
rs62637720	0.92[ASN][1000 genomes]
rs7152374	0.81[AFR][1000 genomes]
rs7152602	0.86[AFR][1000 genomes]
rs7152890	0.85[AFR][1000 genomes]
rs8015545	0.80[ASN][1000 genomes]
rs9671515	0.90[AFR][1000 genomes]
rs9671964	0.90[AFR][1000 genomes]
rs9672055	0.90[AFR][1000 genomes]
rs9672072	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106084200-106087800	Weak transcription	Pancreas	Pancrea
2	chr14:106084200-106088000	Weak transcription	Esophagus	oesophagus
3	chr14:106084200-106088600	Weak transcription	Gastric	stomach
4	chr14:106084200-106089000	Weak transcription	Right Ventricle	heart
5	chr14:106085800-106086000	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:106085800-106086000	ZNF genes & repeats	Spleen	Spleen
7	chr14:106085800-106086200	Enhancers	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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