Variant report

Variant	rs9672055
Chromosome Location	chr14:106083421-106083422
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:106081494..106086015-chr14:106227927..106231140,4	MCF-7	breast:
2	chr14:106082136..106084046-chr14:106227930..106229438,2	MCF-7	breast:

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs10130064	1.00[EUR][1000 genomes]
rs10140012	1.00[EUR][1000 genomes]
rs10147883	1.00[EUR][1000 genomes]
rs11552998	1.00[EUR][1000 genomes]
rs11623609	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11845835	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11848125	1.00[EUR][1000 genomes]
rs11850206	0.90[AFR][1000 genomes]
rs11851505	1.00[EUR][1000 genomes]
rs12431652	1.00[EUR][1000 genomes]
rs12431653	1.00[EUR][1000 genomes]
rs13000	1.00[EUR][1000 genomes]
rs2104053	1.00[EUR][1000 genomes]
rs2753508	1.00[EUR][1000 genomes]
rs2753557	1.00[EUR][1000 genomes]
rs28379859	1.00[EUR][1000 genomes]
rs28539800	0.82[AFR][1000 genomes]
rs28578923	1.00[EUR][1000 genomes]
rs28581525	1.00[EUR][1000 genomes]
rs28582906	0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs28627103	1.00[EUR][1000 genomes]
rs28719009	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3923867	1.00[EUR][1000 genomes]
rs4983362	1.00[EUR][1000 genomes]
rs4983477	1.00[EUR][1000 genomes]
rs4983481	1.00[EUR][1000 genomes]
rs58503622	1.00[EUR][1000 genomes]
rs60701849	1.00[EUR][1000 genomes]
rs61985562	0.95[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs61986371	1.00[EUR][1000 genomes]
rs6576114	1.00[EUR][1000 genomes]
rs6576116	0.86[AFR][1000 genomes]
rs6576119	1.00[EUR][1000 genomes]
rs6576121	1.00[EUR][1000 genomes]
rs7143643	1.00[EUR][1000 genomes]
rs7151762	1.00[EUR][1000 genomes]
rs7152374	0.90[AFR][1000 genomes]
rs7152602	0.96[AFR][1000 genomes]
rs7152890	0.95[AFR][1000 genomes]
rs7494106	1.00[EUR][1000 genomes]
rs9671515	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9671964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9672072	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106080800-106083600	Weak transcription	Primary B cells from peripheral blood	blood
2	chr14:106082400-106084200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr14:106082600-106084200	ZNF genes & repeats	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr14:106082600-106084200	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:106082600-106084200	ZNF genes & repeats	Pancreas	Pancrea
6	chr14:106082600-106084200	ZNF genes & repeats	Spleen	Spleen
7	chr14:106082800-106083800	Bivalent Enhancer	Placenta	Placenta
8	chr14:106083000-106083800	ZNF genes & repeats	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:106083000-106084000	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr14:106083200-106084200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
11	chr14:106083200-106084200	ZNF genes & repeats	H9 Cell Line	embryonic stem cell
12	chr14:106083200-106084200	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
13	chr14:106083200-106084200	ZNF genes & repeats	Gastric	stomach
14	chr14:106083400-106083800	Bivalent Enhancer	Stomach Smooth Muscle	stomach
15	chr14:106083400-106084200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
16	chr14:106083400-106084200	ZNF genes & repeats	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr14:106083400-106084200	ZNF genes & repeats	Esophagus	oesophagus

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