Variant report

Variant	rs61986371
Chromosome Location	chr14:106094107-106094108
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr14:106085106-106094133	GM12892	blood:	n/a	n/a
2	POLR2A	chr14:106084800-106094139	GM12892	blood:	n/a	n/a
3	POLR2A	chr14:106084957-106094154	GM12892	blood:	n/a	n/a
4	POLR2A	chr14:106085083-106094190	GM12892	blood:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr14:106094082-106094132	U87	brain:	n/a
2	chr14:106094082-106094132	AG09319	gingival:	n/a
3	chr14:106094082-106094132	SAEC	small airway:	n/a
4	chr14:106094082-106094132	HCPEpiC	choroid plexus:	n/a
5	chr14:106094082-106094132	SK-N-SH_RA	brain:	n/a
6	chr14:106094082-106094132	HRE	kidney:	n/a
7	chr14:106094082-106094132	HPAEpiC	pulmonary alveolar:	n/a
8	chr14:106094082-106094132	HEEpiC	esophagus:	n/a
9	chr14:106094082-106094132	ECC-1	luminal epithelium:	n/a
10	chr14:106094082-106094132	A549	lung:	n/a
11	chr14:106094082-106094132	HCT-116	colon:	n/a
12	chr14:106094082-106094132	RPTEC	kidney:	n/a
13	chr14:106094082-106094132	K562	blood:	n/a
14	chr14:106094082-106094132	HNPCEpiC	eye:	n/a
15	chr14:106094082-106094132	PANC-1	pancreas:	n/a
16	chr14:106094082-106094132	HEK293	kidney:	embryo
17	chr14:106094082-106094132	T-47D	breast:	n/a
18	chr14:106094082-106094132	IMR90	lung:	fetal
19	chr14:106094082-106094132	SKMC	muscle:	n/a
20	chr14:106094082-106094132	ProgFib	skin:	n/a
21	chr14:106094082-106094132	HIPEpiC	eye:	n/a
22	chr14:106094082-106094132	PFSK-1	brain:	n/a
23	chr14:106094082-106094132	AG04450	lung:	fetal
24	chr14:106094082-106094132	HCF	heart:	n/a
25	chr14:106094082-106094132	H1-hESC	embryonic stem cell:	embryo
26	chr14:106094082-106094132	SK-N-MC	brain:	n/a
27	chr14:106094082-106094132	GM12892	blood:	n/a
28	chr14:106094082-106094132	GM12878	blood:	n/a
29	chr14:106094082-106094132	HMEC	breast:	n/a
30	chr14:106094082-106094132	GM06990	blood:	n/a
31	chr14:106094082-106094132	NHBE	bronchial:	n/a
32	chr14:106094082-106094132	HL-60	blood:	n/a
33	chr14:106094082-106094132	NB4	blood:	n/a
34	chr14:106094082-106094132	MCF-7	breast:	n/a
35	chr14:106094082-106094132	NHDF-neo	bronchial:	n/a
36	chr14:106094082-106094132	BE2_C	brain:	n/a
37	chr14:106094082-106094132	AoSMC	blood vessel:	n/a
38	chr14:106094082-106094132	NT2-D1	testis:	n/a
39	chr14:106094082-106094132	HAEpiC	amniotic membrane:	n/a
40	chr14:106094082-106094132	HRCEpiC	kidney:	n/a
41	chr14:106094082-106094132	Caco-2	colon:	n/a
42	chr14:106094082-106094132	AG10803	skin:	n/a
43	chr14:106094082-106094132	GM12891	blood:	n/a
44	chr14:106094082-106094132	ovcar-3	ovarian:	n/a
45	chr14:106094082-106094132	HCM	heart:	n/a
46	chr14:106094082-106094132	BJ	skin:	n/a
47	chr14:106094082-106094132	Jurkat	blood:	n/a
48	chr14:106094082-106094132	GM19239	blood:	n/a
49	chr14:106094082-106094132	SK-N-SH	brain:	n/a
50	chr14:106094082-106094132	HUVEC	blood vessel:	n/a

No data

Variant related genes	Relation type
IGHG4	TF binding region
IGHG4	CpG island

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10130064	1.00[EUR][1000 genomes]
rs10140012	1.00[EUR][1000 genomes]
rs10147883	1.00[EUR][1000 genomes]
rs11552998	1.00[EUR][1000 genomes]
rs11623609	1.00[EUR][1000 genomes]
rs11845835	1.00[EUR][1000 genomes]
rs11848125	1.00[EUR][1000 genomes]
rs11851505	1.00[EUR][1000 genomes]
rs12431652	1.00[EUR][1000 genomes]
rs12431653	1.00[EUR][1000 genomes]
rs13000	1.00[EUR][1000 genomes]
rs2104053	1.00[EUR][1000 genomes]
rs2753508	1.00[EUR][1000 genomes]
rs2753557	1.00[EUR][1000 genomes]
rs28379859	1.00[EUR][1000 genomes]
rs28578923	1.00[EUR][1000 genomes]
rs28581525	1.00[EUR][1000 genomes]
rs28582906	1.00[EUR][1000 genomes]
rs28627103	1.00[EUR][1000 genomes]
rs28719009	1.00[EUR][1000 genomes]
rs3923867	1.00[EUR][1000 genomes]
rs4983362	1.00[EUR][1000 genomes]
rs4983477	1.00[EUR][1000 genomes]
rs4983481	1.00[EUR][1000 genomes]
rs58503622	1.00[EUR][1000 genomes]
rs60701849	1.00[EUR][1000 genomes]
rs6576114	1.00[EUR][1000 genomes]
rs6576119	1.00[EUR][1000 genomes]
rs6576121	1.00[EUR][1000 genomes]
rs7143643	1.00[EUR][1000 genomes]
rs7151762	1.00[EUR][1000 genomes]
rs7494106	1.00[EUR][1000 genomes]
rs9671515	1.00[EUR][1000 genomes]
rs9671964	1.00[EUR][1000 genomes]
rs9672055	1.00[EUR][1000 genomes]
rs9672072	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106088800-106095400	Weak transcription	Spleen	Spleen
2	chr14:106090000-106097200	Weak transcription	Esophagus	oesophagus
3	chr14:106093600-106095000	Enhancers	Liver	Liver
4	chr14:106093600-106098600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:106093800-106097600	Enhancers	Primary B cells from peripheral blood	blood

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