Variant report

Variant	rs6576116
Chromosome Location	chr14:106082460-106082461
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11623609	0.86[AFR][1000 genomes]
rs11627625	0.85[AFR][1000 genomes]
rs28719009	0.86[AFR][1000 genomes]
rs61985562	0.83[AFR][1000 genomes]
rs7152374	0.94[AFR][1000 genomes]
rs7152602	0.87[AFR][1000 genomes]
rs7152890	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes]
rs9671515	0.86[AFR][1000 genomes]
rs9671964	0.86[AFR][1000 genomes]
rs9672055	0.86[AFR][1000 genomes]
rs9672072	0.86[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106080400-106082600	Weak transcription	Gastric	stomach
2	chr14:106080800-106083600	Weak transcription	Primary B cells from peripheral blood	blood
3	chr14:106081600-106082600	Weak transcription	Placenta	Placenta
4	chr14:106082000-106082600	Weak transcription	Spleen	Spleen
5	chr14:106082400-106082800	Enhancers	Esophagus	oesophagus
6	chr14:106082400-106084200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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