Variant report

Variant	rs10162570
Chromosome Location	chr14:106088651-106088652
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10136838	0.88[ASN][1000 genomes]
rs10137020	0.88[ASN][1000 genomes]
rs11628683	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11850206	0.85[ASN][1000 genomes]
rs4983475	0.82[ASN][1000 genomes]
rs56133431	0.83[ASN][1000 genomes]
rs61985623	0.83[ASN][1000 genomes]
rs62637720	0.80[ASN][1000 genomes]
rs8015545	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530813	chr14:105607701-106453697	Strong transcription Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	149 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:106084200-106089000	Weak transcription	Right Ventricle	heart
2	chr14:106087000-106089600	ZNF genes & repeats	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:106087800-106089200	Enhancers	Stomach Smooth Muscle	stomach
4	chr14:106087800-106089800	Enhancers	Placenta	Placenta
5	chr14:106087800-106089800	Enhancers	Pancreas	Pancrea
6	chr14:106087800-106090200	Enhancers	Liver	Liver
7	chr14:106088000-106088800	Enhancers	Lung	lung
8	chr14:106088000-106089000	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
9	chr14:106088000-106090000	Enhancers	Esophagus	oesophagus
10	chr14:106088400-106088800	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr14:106088400-106088800	Enhancers	Spleen	Spleen
12	chr14:106088600-106088800	Enhancers	Gastric	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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