Variant report
| Variant | rs61988668 |
|---|---|
| Chromosome Location | chr14:42512839-42512840 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-FSCB-4 | chr14:42512800-42513021 | XLOC_011005 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:15)
| rs_ID | r2[population] |
|---|---|
| rs10459429 | 0.85[EUR][1000 genomes] |
| rs12148047 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs12586326 | 0.83[EUR][1000 genomes] |
| rs12586330 | 0.84[EUR][1000 genomes] |
| rs12588452 | 0.84[EUR][1000 genomes] |
| rs12588829 | 0.85[EUR][1000 genomes] |
| rs12885538 | 0.84[EUR][1000 genomes] |
| rs17112532 | 0.85[EUR][1000 genomes] |
| rs1763285 | 0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs34606540 | 0.85[EUR][1000 genomes] |
| rs34918257 | 0.84[EUR][1000 genomes] |
| rs35688153 | 0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs6572124 | 0.91[EUR][1000 genomes] |
| rs8019955 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes] |
| rs9323054 | 0.84[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv564563 | chr14:42477256-42644617 | Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv526260 | chr14:42498031-42672410 | Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv832779 | chr14:42507510-42688901 | Enhancers Active TSS Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
