Variant report

Variant	rs61992559
Chromosome Location	chr14:79648509-79648510
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12434308	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12434843	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12434924	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12434945	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12436673	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12436796	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12437327	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12590183	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12590260	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108796	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108842	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108849	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108928	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108936	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17108944	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35100523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4553548	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899733	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4899735	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4903836	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs57063806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79648000-79652800	Weak transcription	HSMMtube	muscle

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links