Variant report

Variant	rs17108849
Chromosome Location	chr14:79653155-79653156
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs11159398	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11159399	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs11159400	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs11159401	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12431880	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap]
rs12432103	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs12434308	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12434839	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs12434843	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12434924	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12434945	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12435460	1.00[CEU][hapmap]
rs12436344	1.00[CEU][hapmap]
rs12436657	1.00[CEU][hapmap]
rs12436673	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12436711	1.00[CEU][hapmap]
rs12436796	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12437327	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12588153	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs12590183	1.00[CEU][hapmap];0.94[CHB][hapmap];0.97[CHD][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12590260	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1547519	1.00[CEU][hapmap];0.93[CHB][hapmap];0.90[JPT][hapmap]
rs17094100	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17108774	1.00[CEU][hapmap];0.86[JPT][hapmap]
rs17108796	1.00[CEU][hapmap];0.89[MEX][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108836	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17108842	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17108886	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17108889	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs17108893	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs17108898	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs17108909	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];1.00[GIH][hapmap];0.93[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap]
rs17108919	0.88[CHB][hapmap];0.93[JPT][hapmap]
rs17108928	1.00[CEU][hapmap];0.82[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17108933	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108936	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17108944	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17108947	1.00[CEU][hapmap]
rs2047776	1.00[CEU][hapmap]
rs35100523	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4553548	1.00[CEU][hapmap];0.93[CHB][hapmap];0.91[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4899733	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4899734	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4899735	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903835	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap]
rs4903836	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4903837	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[JPT][hapmap]
rs57063806	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs61992559	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
3	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:79652600-79653400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr14:79652600-79653600	Enhancers	Muscle Satellite Cultured Cells	--
3	chr14:79652600-79653600	Enhancers	HSMM	muscle
4	chr14:79652800-79653400	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr14:79652800-79653400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr14:79652800-79653400	Enhancers	HSMMtube	muscle
7	chr14:79653000-79653400	Enhancers	Fetal Lung	lung
8	chr14:79653000-79653400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr14:79653000-79653800	Enhancers	NHLF	lung

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