Variant report

Variant	rs12435460
Chromosome Location	chr14:79638021-79638022
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:79633552..79635611-chr14:79637121..79639941,2	MCF-7	breast:

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs11159398	1.00[CEU][hapmap]
rs11159399	1.00[CEU][hapmap]
rs11159400	1.00[CEU][hapmap]
rs11159401	1.00[CEU][hapmap]
rs12431880	1.00[CEU][hapmap]
rs12432103	1.00[CEU][hapmap]
rs12434308	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12434839	1.00[CEU][hapmap]
rs12434843	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12434924	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12434945	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12436344	1.00[CEU][hapmap]
rs12436657	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12436673	1.00[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12436711	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12436796	1.00[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12437327	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12588153	1.00[CEU][hapmap]
rs12590183	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12590260	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1547519	1.00[CEU][hapmap]
rs17094100	1.00[CEU][hapmap]
rs17108774	1.00[CEU][hapmap];0.93[JPT][hapmap]
rs17108796	1.00[CEU][hapmap];0.94[CHB][hapmap];0.87[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17108836	1.00[CEU][hapmap];0.80[JPT][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108842	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108849	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108886	1.00[CEU][hapmap]
rs17108889	1.00[CEU][hapmap]
rs17108893	1.00[CEU][hapmap]
rs17108898	1.00[CEU][hapmap]
rs17108909	1.00[CEU][hapmap]
rs17108928	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108933	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108936	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108944	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs17108947	1.00[CEU][hapmap]
rs2047776	1.00[CEU][hapmap]
rs2062747	0.93[EUR][1000 genomes]
rs2199796	0.94[CHB][hapmap]
rs35100523	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4553548	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4899733	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4899734	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4899735	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4903835	1.00[CEU][hapmap]
rs4903836	1.00[CEU][hapmap];0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4903837	1.00[CEU][hapmap]
rs57063806	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs61992559	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs766024	0.94[CHB][hapmap];0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041991	chr14:79394408-79644886	Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv931412	chr14:79420297-79928269	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv1040837	chr14:79583862-79711565	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
4	nsv902110	chr14:79624492-79998294	Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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