Variant report
| Variant | rs2047776 |
|---|---|
| Chromosome Location | chr14:79599590-79599591 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:44)
| rs_ID | r2[population] |
|---|---|
| rs11159398 | 1.00[CEU][hapmap] |
| rs11159399 | 1.00[CEU][hapmap] |
| rs11159400 | 1.00[CEU][hapmap] |
| rs11159401 | 1.00[CEU][hapmap] |
| rs12431880 | 1.00[CEU][hapmap] |
| rs12432103 | 1.00[CEU][hapmap] |
| rs12434308 | 1.00[CEU][hapmap] |
| rs12434839 | 1.00[CEU][hapmap] |
| rs12434843 | 1.00[CEU][hapmap] |
| rs12434924 | 1.00[CEU][hapmap] |
| rs12434945 | 1.00[CEU][hapmap] |
| rs12435460 | 1.00[CEU][hapmap] |
| rs12436344 | 1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap] |
| rs12436657 | 1.00[CEU][hapmap] |
| rs12436673 | 1.00[CEU][hapmap] |
| rs12436711 | 1.00[CEU][hapmap] |
| rs12436796 | 1.00[CEU][hapmap] |
| rs12437327 | 1.00[CEU][hapmap] |
| rs12588153 | 1.00[CEU][hapmap] |
| rs12590183 | 1.00[CEU][hapmap] |
| rs12590260 | 1.00[CEU][hapmap] |
| rs1547519 | 1.00[CEU][hapmap] |
| rs17094100 | 1.00[CEU][hapmap] |
| rs17108774 | 1.00[CEU][hapmap] |
| rs17108796 | 1.00[CEU][hapmap];0.90[MEX][hapmap];0.87[EUR][1000 genomes] |
| rs17108836 | 1.00[CEU][hapmap] |
| rs17108842 | 1.00[CEU][hapmap] |
| rs17108849 | 1.00[CEU][hapmap] |
| rs17108886 | 1.00[CEU][hapmap] |
| rs17108889 | 1.00[CEU][hapmap] |
| rs17108893 | 1.00[CEU][hapmap] |
| rs17108898 | 1.00[CEU][hapmap] |
| rs17108909 | 1.00[CEU][hapmap] |
| rs17108928 | 1.00[CEU][hapmap] |
| rs17108936 | 1.00[CEU][hapmap] |
| rs17108944 | 1.00[CEU][hapmap] |
| rs17108947 | 1.00[CEU][hapmap] |
| rs2062747 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4553548 | 1.00[CEU][hapmap] |
| rs4899733 | 1.00[CEU][hapmap] |
| rs4899735 | 1.00[CEU][hapmap] |
| rs4903835 | 1.00[CEU][hapmap] |
| rs4903836 | 1.00[CEU][hapmap] |
| rs4903837 | 1.00[CEU][hapmap] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1041991 | chr14:79394408-79644886 | Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv931412 | chr14:79420297-79928269 | Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv948724 | chr14:79484233-79614043 | Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2761846 | chr14:79522198-79629157 | Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1040837 | chr14:79583862-79711565 | Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | n/a |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
