Variant report

Variant	rs61998504
Chromosome Location	chr14:39687377-39687378
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39653322..39655691-chr14:39686877..39688589,2	MCF-7	breast:
2	chr14:39637993..39640586-chr14:39685668..39689365,3	MCF-7	breast:
3	chr14:39638915..39642050-chr14:39686230..39689308,3	MCF-7	breast:
4	chr14:39686963..39689820-chr14:39735016..39736647,2	K562	blood:

Variant related genes	Relation type
ENSG00000258941	Chromatin interaction
ENSG00000150527	Chromatin interaction
ENSG00000182400	Chromatin interaction
ENSG00000258940	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11626069	1.00[EUR][1000 genomes]
rs61998507	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv977460	chr14:39684663-39690168	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39685200-39687400	Enhancers	Hela-S3	cervix
3	chr14:39686400-39687400	Enhancers	HepG2	liver
4	chr14:39686400-39688400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:39686400-39688600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr14:39686400-39688600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr14:39686400-39688600	Enhancers	Small Intestine	intestine
8	chr14:39686400-39688600	Enhancers	HMEC	breast
9	chr14:39686400-39688600	Enhancers	NHEK	skin
10	chr14:39686400-39688800	Enhancers	HUVEC	blood vessel
11	chr14:39686600-39688200	Enhancers	Ovary	ovary
12	chr14:39686600-39688600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:39686600-39688600	Enhancers	Stomach Mucosa	stomach
14	chr14:39686800-39687400	Enhancers	Muscle Satellite Cultured Cells	--
15	chr14:39686800-39687600	Enhancers	Gastric	stomach
16	chr14:39686800-39688400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr14:39686800-39688600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:39686800-39688600	Enhancers	Fetal Intestine Large	intestine
19	chr14:39687000-39687600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr14:39687200-39687600	Enhancers	HUES6 Cell Line	embryonic stem cell
21	chr14:39687200-39687800	Flanking Active TSS	A549	lung
22	chr14:39687200-39688000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr14:39687200-39688000	Enhancers	K562	blood
24	chr14:39687200-39688600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin

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