Variant report

Variant	rs62006153
Chromosome Location	chr15:35240125-35240126
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs16960038	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16960078	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16960089	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs16960096	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs57438390	0.81[EUR][1000 genomes]
rs62006150	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
5	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
7	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
2	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
3	chr15:35220600-35260200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:35220800-35251400	Weak transcription	Aorta	Aorta
5	chr15:35221200-35260800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr15:35222800-35242600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr15:35223400-35260600	Weak transcription	Fetal Heart	heart
8	chr15:35224200-35251200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr15:35224200-35258800	Weak transcription	Brain Cingulate Gyrus	brain
10	chr15:35225200-35250400	Weak transcription	Spleen	Spleen
11	chr15:35225200-35251400	Weak transcription	Colonic Mucosa	Colon
12	chr15:35225200-35254200	Weak transcription	Right Ventricle	heart
13	chr15:35225400-35259200	Weak transcription	Psoas Muscle	Psoas
14	chr15:35226000-35251400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr15:35229400-35261000	Weak transcription	Placenta Amnion	Placenta Amnion
16	chr15:35231600-35242600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr15:35231800-35240400	Weak transcription	NHEK	skin
18	chr15:35232200-35244400	Weak transcription	NHLF	lung
19	chr15:35232200-35260800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr15:35232400-35256600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
21	chr15:35232600-35251400	Weak transcription	Fetal Brain Male	brain
22	chr15:35232800-35243000	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr15:35232800-35247600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr15:35232800-35250400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr15:35232800-35258800	Weak transcription	Brain Germinal Matrix	brain
26	chr15:35233000-35240200	Weak transcription	Hela-S3	cervix
27	chr15:35233000-35242800	Weak transcription	HSMMtube	muscle
28	chr15:35233000-35244400	Weak transcription	Rectal Smooth Muscle	rectum
29	chr15:35233200-35259600	Weak transcription	Brain Angular Gyrus	brain
30	chr15:35235000-35242600	Weak transcription	K562	blood
31	chr15:35235000-35242800	Weak transcription	NHDF-Ad	bronchial
32	chr15:35235000-35243000	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:35235000-35246600	Weak transcription	Ovary	ovary
34	chr15:35235000-35247200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
35	chr15:35235000-35251200	Weak transcription	HepG2	liver
36	chr15:35235000-35251400	Weak transcription	Brain Hippocampus Middle	brain
37	chr15:35235000-35256400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
38	chr15:35235000-35256400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
39	chr15:35235000-35258000	Weak transcription	Brain Substantia Nigra	brain
40	chr15:35235000-35258800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
41	chr15:35235000-35260200	Weak transcription	Stomach Mucosa	stomach
42	chr15:35235000-35260800	Weak transcription	Brain Inferior Temporal Lobe	brain
43	chr15:35235200-35243000	Weak transcription	Stomach Smooth Muscle	stomach
44	chr15:35235200-35254000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
45	chr15:35235200-35260800	Weak transcription	Fetal Brain Female	brain
46	chr15:35235400-35240400	Weak transcription	HUVEC	blood vessel
47	chr15:35235400-35246200	Weak transcription	Pancreas	Pancrea
48	chr15:35235400-35259400	Weak transcription	Gastric	stomach
49	chr15:35235600-35242400	Weak transcription	Fetal Muscle Leg	muscle
50	chr15:35235600-35243000	Weak transcription	H9 Cell Line	embryonic stem cell

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