Variant report

Variant	rs16960096
Chromosome Location	chr15:35225819-35225820
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11073072	0.93[CHD][hapmap];0.83[GIH][hapmap]
rs16959922	0.81[ASN][1000 genomes]
rs16960038	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16960078	0.84[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs16960089	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62006142	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs62006143	0.80[ASN][1000 genomes]
rs62006150	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62006153	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs8033479	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
3	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
7	nsv904071	chr15:35150897-35250771	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv904072	chr15:35150897-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	nsv569154	chr15:35165366-35259376	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35186000-35232000	Weak transcription	Fetal Brain Male	brain
2	chr15:35186400-35238800	Strong transcription	Primary T helper cells fromperipheralblood	blood
3	chr15:35197600-35238800	Strong transcription	Primary neutrophils fromperipheralblood	blood
4	chr15:35198800-35261200	Weak transcription	Esophagus	oesophagus
5	chr15:35204600-35227000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr15:35207000-35234600	Weak transcription	Stomach Mucosa	stomach
7	chr15:35207000-35259400	Weak transcription	Small Intestine	intestine
8	chr15:35207400-35239800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:35209800-35232200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr15:35211000-35231800	Weak transcription	Brain Angular Gyrus	brain
11	chr15:35213800-35235400	Strong transcription	Liver	Liver
12	chr15:35213800-35238800	Strong transcription	Placenta	Placenta
13	chr15:35213800-35238800	Strong transcription	Monocytes-CD14+_RO01746	blood
14	chr15:35214000-35238200	Strong transcription	Primary monocytes fromperipheralblood	blood
15	chr15:35214200-35237600	Strong transcription	HUES6 Cell Line	embryonic stem cell
16	chr15:35214200-35238000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
17	chr15:35214200-35238200	Strong transcription	HUES64 Cell Line	embryonic stem cell
18	chr15:35215600-35227800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
19	chr15:35215800-35238800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr15:35216200-35228200	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr15:35216600-35226400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:35216800-35236600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr15:35217000-35228600	Strong transcription	HSMM	muscle
24	chr15:35217000-35237000	Strong transcription	Primary T helper cells PMA-I stimulated	--
25	chr15:35217000-35238600	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr15:35217200-35234600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:35217200-35238200	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr15:35217400-35226000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr15:35217400-35226200	Strong transcription	Primary T cells from cord blood	blood
30	chr15:35217400-35226400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr15:35217400-35227000	Strong transcription	Dnd41	blood
32	chr15:35217400-35233200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr15:35217400-35237000	Strong transcription	Rectal Mucosa Donor 29	rectum
34	chr15:35217400-35238200	Strong transcription	Primary B cells from peripheral blood	blood
35	chr15:35217400-35238400	Strong transcription	HUES48 Cell Line	embryonic stem cell
36	chr15:35217400-35238400	Strong transcription	Adipose Nuclei	Adipose
37	chr15:35217600-35233000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr15:35218000-35238200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
39	chr15:35218400-35234800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr15:35218600-35226200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:35218600-35226400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
42	chr15:35218600-35227200	Strong transcription	H1 Cell Line	embryonic stem cell
43	chr15:35218600-35227400	Strong transcription	HUVEC	blood vessel
44	chr15:35218600-35238400	Strong transcription	Duodenum Mucosa	Duodenum
45	chr15:35218600-35238400	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr15:35219400-35226000	Strong transcription	NH-A	brain
47	chr15:35219600-35226400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
48	chr15:35219600-35226400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr15:35219600-35226600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr15:35219600-35228600	Strong transcription	Primary hematopoietic stem cells	blood

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