Variant report

Variant	rs8033479
Chromosome Location	chr15:35141453-35141454
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:35139930..35141497-chr15:35142763..35145375,2	K562	blood:
2	chr15:35130591..35132648-chr15:35139707..35142491,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AC114546.1-7	chr15:35141428-35141868	NONHSAT041608

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11073072	0.81[CHB][hapmap];0.98[CHD][hapmap];0.81[GIH][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs12910115	0.83[ASN][1000 genomes]
rs16959922	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16960038	0.85[CEU][hapmap];0.83[CHB][hapmap];0.83[JPT][hapmap];0.85[ASN][1000 genomes]
rs16960078	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.86[ASN][1000 genomes]
rs16960089	0.85[CEU][hapmap];0.89[CHB][hapmap];0.90[JPT][hapmap]
rs16960096	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[CHD][hapmap];0.90[JPT][hapmap];0.81[ASN][1000 genomes]
rs62006142	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62006143	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62006150	0.82[ASN][1000 genomes]
rs8030719	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8036916	0.81[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3350109	chr15:34668106-35534229	Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv569133	chr15:34881304-35142566	Active TSS Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
3	nsv522411	chr15:34953986-35462981	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
4	nsv457106	chr15:35049787-35227613	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
5	nsv569153	chr15:35049787-35227613	Active TSS Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	esv2761865	chr15:35101678-35271639	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
7	nsv832967	chr15:35110102-35267906	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:35128800-35142400	Weak transcription	Pancreas	Pancrea
2	chr15:35129200-35147600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:35130000-35145600	Weak transcription	A549	lung
4	chr15:35130200-35147800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr15:35130400-35147600	Weak transcription	NHLF	lung
6	chr15:35134000-35145200	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr15:35134000-35145600	Weak transcription	Stomach Smooth Muscle	stomach
8	chr15:35134000-35147400	Weak transcription	NHDF-Ad	bronchial
9	chr15:35134600-35147600	Weak transcription	HSMM	muscle
10	chr15:35134800-35147400	Weak transcription	Fetal Muscle Leg	muscle
11	chr15:35138200-35141600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr15:35139600-35148000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr15:35139800-35143800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr15:35140000-35145000	Weak transcription	Primary T cells from cord blood	blood
15	chr15:35140200-35144800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr15:35140200-35145000	Weak transcription	Hela-S3	cervix
17	chr15:35140200-35146800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr15:35140400-35146800	Weak transcription	Primary monocytes fromperipheralblood	blood
19	chr15:35140400-35221600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr15:35140600-35148000	Weak transcription	NHEK	skin
21	chr15:35140800-35145000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr15:35140800-35146600	Weak transcription	Fetal Intestine Large	intestine
23	chr15:35140800-35147200	Weak transcription	Thymus	Thymus
24	chr15:35140800-35147400	Weak transcription	Duodenum Mucosa	Duodenum
25	chr15:35141000-35146800	Weak transcription	NH-A	brain
26	chr15:35141000-35147200	Weak transcription	Brain Inferior Temporal Lobe	brain
27	chr15:35141000-35148000	Weak transcription	Fetal Brain Female	brain
28	chr15:35141400-35141600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:35141400-35141600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr15:35141400-35142600	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:35141400-35142600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:35141400-35147200	Weak transcription	HUES6 Cell Line	embryonic stem cell

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