Variant report

Variant	rs62008303
Chromosome Location	chr15:45964038-45964039
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs35383220	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:86 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45941600-45966800	Weak transcription	NHLF	lung
2	chr15:45947600-45968200	Weak transcription	Placenta	Placenta
3	chr15:45949600-45976800	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr15:45950400-45969600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
6	chr15:45950800-45986000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr15:45952800-45968400	Weak transcription	Brain Anterior Caudate	brain
8	chr15:45952800-45970200	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr15:45953000-45968200	Weak transcription	A549	lung
10	chr15:45953000-45984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr15:45953200-45977600	Weak transcription	Stomach Mucosa	stomach
12	chr15:45953400-45974600	Weak transcription	HepG2	liver
13	chr15:45953400-45986200	Strong transcription	Rectal Mucosa Donor 29	rectum
14	chr15:45954000-45980000	Weak transcription	Fetal Thymus	thymus
15	chr15:45954600-45964400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr15:45954600-45966800	Weak transcription	Small Intestine	intestine
17	chr15:45954800-45981600	Weak transcription	Brain Substantia Nigra	brain
18	chr15:45955000-45964800	Weak transcription	Rectal Smooth Muscle	rectum
19	chr15:45955200-45964800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr15:45956000-45970200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr15:45957400-45964400	Weak transcription	Thymus	Thymus
22	chr15:45957400-45967000	Weak transcription	Muscle Satellite Cultured Cells	--
23	chr15:45957400-45972200	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:45957400-45973400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr15:45957400-45981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:45957400-45985800	Weak transcription	HSMMtube	muscle
27	chr15:45957600-45964400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr15:45957600-45965000	Weak transcription	Right Ventricle	heart
29	chr15:45957800-45970400	Weak transcription	Osteobl	bone
30	chr15:45958400-45986400	Weak transcription	Fetal Muscle Leg	muscle
31	chr15:45959600-45986200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
32	chr15:45960000-45970400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr15:45960000-45986000	Strong transcription	Duodenum Smooth Muscle	Duodenum
34	chr15:45960200-45971200	Strong transcription	Colonic Mucosa	Colon
35	chr15:45960200-45987800	Strong transcription	Primary monocytes fromperipheralblood	blood
36	chr15:45960400-45964200	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr15:45960400-45970800	Strong transcription	Left Ventricle	heart
38	chr15:45960400-45985200	Strong transcription	Primary T helper cells PMA-I stimulated	--
39	chr15:45960400-45985800	Strong transcription	Primary T helper cells fromperipheralblood	blood
40	chr15:45960400-45986200	Strong transcription	Duodenum Mucosa	Duodenum
41	chr15:45960400-45987000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr15:45960400-45988200	Strong transcription	Rectal Mucosa Donor 31	rectum
43	chr15:45960600-45965400	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
44	chr15:45960600-45965800	Strong transcription	Psoas Muscle	Psoas
45	chr15:45960600-45966000	Strong transcription	HMEC	breast
46	chr15:45960600-45969000	Strong transcription	Sigmoid Colon	Sigmoid Colon
47	chr15:45960600-45970400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
48	chr15:45960600-45985800	Strong transcription	Primary T cells from cord blood	blood
49	chr15:45960600-45986000	Strong transcription	Primary B cells from peripheral blood	blood
50	chr15:45960600-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links