Variant report

Variant	rs62008424
Chromosome Location	chr15:77546219-77546220
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:77540244..77541923-chr15:77546088..77547627,2	K562	blood:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs62007214	1.00[AFR][1000 genomes]
rs62008411	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3440794	chr15:76764595-77571114	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv1040852	chr15:77160237-78137541	Enhancers Flanking Active TSS Active TSS Strong transcription Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
3	nsv1045376	chr15:77354671-77801487	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv542443	chr15:77354671-77801487	Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
5	esv1832234	chr15:77451350-77694607	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
6	nsv916323	chr15:77485765-78121259	Enhancers Strong transcription Weak transcription Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
7	nsv1041064	chr15:77497903-77631698	Strong transcription Enhancers Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv1051744	chr15:77511489-77679160	Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv1044270	chr15:77534919-77611256	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv542445	chr15:77534919-77611256	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
11	esv1830237	chr15:77535785-77694607	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
12	nsv869991	chr15:77545316-77578885	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	nsv976867	chr15:77545319-77570795	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:77505800-77559400	Weak transcription	Psoas Muscle	Psoas
2	chr15:77517400-77559000	Weak transcription	Ovary	ovary
3	chr15:77519400-77551800	Weak transcription	Duodenum Smooth Muscle	Duodenum
4	chr15:77519600-77551800	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr15:77519800-77557200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:77520200-77578800	Weak transcription	Small Intestine	intestine
7	chr15:77526400-77547600	Weak transcription	Liver	Liver
8	chr15:77527000-77559000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
9	chr15:77527000-77576200	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr15:77528400-77553000	Weak transcription	Aorta	Aorta
11	chr15:77528800-77559200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:77528800-77571400	Weak transcription	Right Ventricle	heart
13	chr15:77528800-77574400	Weak transcription	HepG2	liver
14	chr15:77528800-77577200	Weak transcription	Spleen	Spleen
15	chr15:77528800-77579200	Weak transcription	Brain Angular Gyrus	brain
16	chr15:77529000-77548600	Weak transcription	Gastric	stomach
17	chr15:77529200-77546400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr15:77529200-77546800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr15:77529200-77561400	Weak transcription	Primary T cells from cord blood	blood
20	chr15:77529400-77547800	Weak transcription	GM12878-XiMat	blood
21	chr15:77529400-77551800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr15:77529400-77552600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr15:77529400-77558600	Weak transcription	Fetal Muscle Leg	muscle
24	chr15:77529400-77558600	Weak transcription	Lung	lung
25	chr15:77529400-77558800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
26	chr15:77529400-77559000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
27	chr15:77529400-77559600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:77529400-77565400	Weak transcription	Dnd41	blood
29	chr15:77529400-77574400	Weak transcription	Muscle Satellite Cultured Cells	--
30	chr15:77539600-77553000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr15:77540400-77548000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
32	chr15:77540400-77551800	Weak transcription	Colon Smooth Muscle	Colon
33	chr15:77540600-77552800	Weak transcription	Fetal Heart	heart
34	chr15:77541000-77550000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr15:77541800-77546800	Weak transcription	HMEC	breast
36	chr15:77541800-77589800	Weak transcription	Fetal Intestine Small	intestine
37	chr15:77542000-77575200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr15:77542000-77575200	Weak transcription	HUVEC	blood vessel
39	chr15:77542200-77548400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
40	chr15:77542200-77558800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:77542200-77580000	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr15:77544200-77548000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr15:77544400-77546800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
44	chr15:77544400-77548000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr15:77544400-77563600	Weak transcription	Pancreas	Pancrea
46	chr15:77544400-77571400	Weak transcription	HSMMtube	muscle
47	chr15:77544400-77581000	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr15:77544600-77552000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr15:77544600-77552000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
50	chr15:77544600-77552000	Weak transcription	Fetal Stomach	stomach

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