Variant report

Variant	rs62011732
Chromosome Location	chr15:83565221-83565222
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:83558288..83561120-chr15:83563049..83565497,2	MCF-7	breast:
2	chr15:83564008..83565509-chr15:83591917..83594475,2	MCF-7	breast:
3	chr15:83564369..83566248-chr15:83586818..83589163,2	K562	blood:

Extended variants
information (count: 27 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10906985	0.94[ASN][1000 genomes]
rs11259959	0.99[ASN][1000 genomes]
rs12385964	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1256425	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1256429	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs1256434	0.96[ASN][1000 genomes]
rs1256451	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1256453	0.96[ASN][1000 genomes]
rs1256455	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1256456	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12905235	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs13380133	0.93[ASN][1000 genomes]
rs17360083	0.94[ASN][1000 genomes]
rs2458017	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2621227	0.99[ASN][1000 genomes]
rs2621228	0.99[ASN][1000 genomes]
rs2667382	0.93[ASN][1000 genomes]
rs2667383	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2667385	0.99[ASN][1000 genomes]
rs2928572	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs41310978	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62011731	0.99[ASN][1000 genomes]
rs62011734	0.94[ASN][1000 genomes]
rs7168760	0.99[ASN][1000 genomes]
rs7169401	0.99[ASN][1000 genomes]
rs8038679	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806543	0.94[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs62011732	RPS17	Cis_1M	lymphoblastoid	RTeQTL
rs62011732	WHAMM	cis	Adipose Subcutaneous	GTEx

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:83524600-83567800	Weak transcription	Left Ventricle	heart
2	chr15:83540600-83573200	Weak transcription	Right Atrium	heart
3	chr15:83541000-83566200	Weak transcription	Spleen	Spleen
4	chr15:83542400-83567200	Weak transcription	Brain Angular Gyrus	brain
5	chr15:83543600-83567600	Weak transcription	Aorta	Aorta
6	chr15:83558400-83569600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
7	chr15:83558600-83566600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr15:83558600-83567800	Weak transcription	Psoas Muscle	Psoas
9	chr15:83559600-83570200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:83560400-83570200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr15:83561400-83566200	Weak transcription	Liver	Liver
12	chr15:83563800-83565400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr15:83563800-83565400	Enhancers	Fetal Muscle Trunk	muscle
14	chr15:83563800-83565400	Enhancers	Placenta	Placenta
15	chr15:83563800-83565600	Enhancers	Fetal Muscle Leg	muscle
16	chr15:83564200-83565600	Enhancers	HSMMtube	muscle
17	chr15:83564200-83569400	Weak transcription	HepG2	liver
18	chr15:83564400-83566400	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr15:83564400-83566600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr15:83564400-83568000	Weak transcription	Brain Inferior Temporal Lobe	brain
21	chr15:83564400-83569400	Weak transcription	Brain Hippocampus Middle	brain
22	chr15:83564400-83569600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr15:83564400-83569800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:83564600-83566600	Weak transcription	Colon Smooth Muscle	Colon
25	chr15:83564600-83569400	Weak transcription	HSMM	muscle
26	chr15:83565000-83565400	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr15:83565000-83565400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
28	chr15:83565000-83565400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
29	chr15:83565000-83566200	Genic enhancers	Pancreas	Pancrea
30	chr15:83565000-83566600	Weak transcription	Skeletal Muscle Male	skeletal muscle
31	chr15:83565200-83565800	Enhancers	Gastric	stomach

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