Variant report

Variant	rs62015463
Chromosome Location	chr15:73531734-73531735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:73529298..73531407-chr15:73531579..73534636,3	K562	blood:
2	chr15:73530199..73532028-chr15:73536328..73538305,2	MCF-7	breast:
3	chr15:73073955..73076534-chr15:73531451..73534310,3	MCF-7	breast:
4	chr15:73517252..73519302-chr15:73531037..73533501,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000159322	Chromatin interaction
ENSG00000260898	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs62017790	1.00[AFR][1000 genomes]
rs72741416	1.00[AFR][1000 genomes]
rs72741424	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:69 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
2	chr15:73518200-73540800	Weak transcription	Colonic Mucosa	Colon
3	chr15:73518400-73531800	Weak transcription	Aorta	Aorta
4	chr15:73518600-73534000	Weak transcription	Right Ventricle	heart
5	chr15:73518800-73546200	Weak transcription	Psoas Muscle	Psoas
6	chr15:73518800-73547800	Weak transcription	Left Ventricle	heart
7	chr15:73520400-73562400	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr15:73520600-73579600	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:73520800-73536400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:73523000-73572200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr15:73523200-73547800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:73524200-73536600	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr15:73524200-73546200	Weak transcription	Esophagus	oesophagus
14	chr15:73524200-73547000	Weak transcription	Ovary	ovary
15	chr15:73524400-73542200	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr15:73524800-73538400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr15:73525000-73548800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:73525200-73546200	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:73525200-73547000	Weak transcription	Pancreas	Pancrea
20	chr15:73525400-73532000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr15:73525600-73547800	Weak transcription	Gastric	stomach
22	chr15:73526400-73531800	Weak transcription	Fetal Brain Female	brain
23	chr15:73526600-73541400	Weak transcription	HUES6 Cell Line	embryonic stem cell
24	chr15:73527000-73531800	Weak transcription	Fetal Brain Male	brain
25	chr15:73527000-73536600	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr15:73527000-73547000	Weak transcription	Brain Angular Gyrus	brain
27	chr15:73527000-73579400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr15:73527400-73542000	Weak transcription	Brain Germinal Matrix	brain
29	chr15:73527400-73551600	Weak transcription	Small Intestine	intestine
30	chr15:73527600-73538400	Weak transcription	Brain Cingulate Gyrus	brain
31	chr15:73527600-73562400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr15:73528200-73538000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr15:73528800-73547000	Weak transcription	Lung	lung
34	chr15:73529000-73538600	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr15:73529000-73552600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:73529400-73536400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr15:73529400-73547000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:73529600-73546000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr15:73529800-73538400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr15:73529800-73542000	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr15:73530000-73536400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr15:73530000-73536400	Weak transcription	Brain Anterior Caudate	brain
43	chr15:73530200-73531800	Weak transcription	Rectal Mucosa Donor 29	rectum
44	chr15:73530400-73532000	Weak transcription	Brain Hippocampus Middle	brain
45	chr15:73530400-73536600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
46	chr15:73530400-73536800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr15:73530600-73531800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:73530600-73531800	Weak transcription	Brain Substantia Nigra	brain
49	chr15:73530600-73531800	Weak transcription	Fetal Lung	lung
50	chr15:73530600-73535800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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