Variant report

Variant	rs62017790
Chromosome Location	chr15:73514101-73514102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs62015257	1.00[AFR][1000 genomes]
rs62015463	1.00[AFR][1000 genomes]
rs62015483	1.00[EUR][1000 genomes]
rs72741416	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72741424	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525462	chr15:73349633-73563495	Genic enhancers Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv904340	chr15:73375847-73524629	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv904342	chr15:73390790-73524629	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
4	nsv904343	chr15:73396760-73775043	Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Genic enhancers Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:73474200-73523800	Weak transcription	Esophagus	oesophagus
2	chr15:73475200-73517600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:73487200-73519800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr15:73492200-73518000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr15:73492400-73516200	Weak transcription	Fetal Brain Male	brain
6	chr15:73493400-73528600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr15:73497000-73517600	Weak transcription	Brain Hippocampus Middle	brain
8	chr15:73497800-73541800	Weak transcription	Fetal Kidney	kidney
9	chr15:73498000-73515200	Weak transcription	Fetal Lung	lung
10	chr15:73502800-73517200	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr15:73509400-73525000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr15:73509600-73528800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr15:73513800-73514200	ZNF genes & repeats	Fetal Intestine Small	intestine
14	chr15:73513800-73514400	ZNF genes & repeats	Fetal Stomach	stomach

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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