Variant report

Variant	rs62015674
Chromosome Location	chr14:39943594-39943595
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	SPI1	chr14:39943553-39943886	GM12891	blood:	n/a	n/a
2	NFIC	chr14:39943506-39944361	GM12878	blood:	n/a	n/a
3	RUNX3	chr14:39943571-39944252	GM12878	blood:	n/a	n/a
4	SPI1	chr14:39943573-39943893	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ENSG00000258526	TF binding region

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10047876	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10133746	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10134065	0.83[ASN][1000 genomes]
rs10136490	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136915	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10142029	0.81[ASN][1000 genomes]
rs10143148	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10144377	0.91[AFR][1000 genomes]
rs10145757	0.82[AFR][1000 genomes]
rs10146106	0.81[ASN][1000 genomes]
rs10146622	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs10483538	0.91[AFR][1000 genomes]
rs12431558	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12431815	0.83[ASN][1000 genomes]
rs12433987	0.91[AFR][1000 genomes]
rs12434300	0.83[ASN][1000 genomes]
rs17109168	0.81[ASN][1000 genomes]
rs17622868	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2103795	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2179973	0.90[ASN][1000 genomes]
rs28398804	0.90[ASN][1000 genomes]
rs28419351	0.90[ASN][1000 genomes]
rs28454173	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28568594	0.90[ASN][1000 genomes]
rs28704775	0.90[ASN][1000 genomes]
rs28871954	0.90[ASN][1000 genomes]
rs2899887	0.91[AFR][1000 genomes]
rs4316662	0.91[AFR][1000 genomes]
rs59804731	0.83[ASN][1000 genomes]
rs61999073	0.91[AFR][1000 genomes];0.83[ASN][1000 genomes]
rs61999077	0.90[ASN][1000 genomes]
rs61999079	0.91[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs62000686	0.82[AFR][1000 genomes]
rs62000696	0.91[AFR][1000 genomes]
rs62000708	0.91[AFR][1000 genomes]
rs62000709	0.91[AFR][1000 genomes]
rs62000711	0.91[AFR][1000 genomes]
rs62000715	0.91[AFR][1000 genomes]
rs62001106	0.90[ASN][1000 genomes]
rs62015677	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62017271	0.83[ASN][1000 genomes]
rs7146753	0.90[ASN][1000 genomes]
rs7156962	0.83[ASN][1000 genomes]
rs7158282	0.83[ASN][1000 genomes]
rs7161482	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8006076	0.81[ASN][1000 genomes]
rs8007036	0.81[ASN][1000 genomes]
rs8007769	0.83[ASN][1000 genomes]
rs9322999	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
3	esv3523177	chr14:39875036-40128325	Flanking Active TSS Enhancers ZNF genes & repeats Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
4	esv3523178	chr14:39875036-40128325	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
5	nsv832774	chr14:39897746-40060823	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39939000-39946000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr14:39939000-39954600	Weak transcription	Brain Hippocampus Middle	brain
3	chr14:39941000-39944200	Weak transcription	Fetal Heart	heart
4	chr14:39943400-39944400	Enhancers	GM12878-XiMat	blood
5	chr14:39943400-39944400	Enhancers	HepG2	liver

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