Variant report

Variant	rs7158282
Chromosome Location	chr14:39871742-39871743
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10047876	1.00[CHB][hapmap];0.83[ASN][1000 genomes]
rs10130181	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs10132190	0.93[ASN][1000 genomes]
rs10133746	1.00[CHB][hapmap];0.82[JPT][hapmap];0.81[ASN][1000 genomes]
rs10134065	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10136490	1.00[CHB][hapmap];0.82[JPT][hapmap];0.83[ASN][1000 genomes]
rs10136915	0.83[ASN][1000 genomes]
rs10140997	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs10142029	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10143148	0.81[ASN][1000 genomes]
rs10144377	0.93[ASN][1000 genomes]
rs10145757	0.93[ASN][1000 genomes]
rs10146106	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs10146622	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10147286	1.00[CHB][hapmap]
rs10220689	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10483538	0.82[JPT][hapmap];0.88[ASN][1000 genomes]
rs12185014	0.95[ASN][1000 genomes]
rs12433987	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs12437261	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17109168	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs17109185	0.91[AFR][1000 genomes]
rs17109219	0.83[YRI][hapmap];0.89[AFR][1000 genomes]
rs17622868	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1955716	0.85[CHB][hapmap]
rs1998885	0.86[CHB][hapmap]
rs1998886	0.86[CHB][hapmap]
rs2103795	0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2179973	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28398804	0.96[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28419351	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28454173	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28568594	0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28571663	0.93[ASN][1000 genomes]
rs28704775	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28871954	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2899887	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3783291	0.82[CHB][hapmap]
rs4316662	0.93[ASN][1000 genomes]
rs4902458	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs4902559	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs56804791	0.91[AFR][1000 genomes]
rs59337169	0.88[AFR][1000 genomes]
rs61999073	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61999077	0.93[ASN][1000 genomes]
rs61999079	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62000696	0.93[ASN][1000 genomes]
rs62000708	0.93[ASN][1000 genomes]
rs62000709	0.93[ASN][1000 genomes]
rs62000710	0.93[ASN][1000 genomes]
rs62000711	0.88[ASN][1000 genomes]
rs62000715	0.90[ASN][1000 genomes]
rs62000720	0.89[ASN][1000 genomes]
rs62001106	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62015674	0.83[ASN][1000 genomes]
rs62015677	0.83[ASN][1000 genomes]
rs7140854	0.83[YRI][hapmap];0.91[AFR][1000 genomes]
rs7146753	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7156962	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7161482	0.83[ASN][1000 genomes]
rs73285548	0.91[AFR][1000 genomes]
rs73285551	0.91[AFR][1000 genomes]
rs73285587	0.91[AFR][1000 genomes]
rs73285597	0.91[AFR][1000 genomes]
rs8006076	1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[ASN][1000 genomes]
rs8007036	0.98[ASN][1000 genomes]
rs9322999	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9805937	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1037183	chr14:39736939-39949233	Weak transcription Strong transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases
2	nsv542048	chr14:39736939-39949233	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39770800-39872400	Weak transcription	Colonic Mucosa	Colon
2	chr14:39835400-39872400	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:39836200-39872800	Weak transcription	Esophagus	oesophagus
4	chr14:39840000-39882600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr14:39846200-39878800	Weak transcription	Right Ventricle	heart
6	chr14:39846800-39872400	Weak transcription	HSMMtube	muscle
7	chr14:39853600-39874200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr14:39854400-39872600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr14:39860200-39882200	Weak transcription	Fetal Heart	heart
10	chr14:39861200-39871800	Weak transcription	Fetal Brain Male	brain
11	chr14:39861200-39872200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
12	chr14:39861400-39874000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:39861800-39872000	Weak transcription	K562	blood
14	chr14:39862000-39886000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr14:39862400-39874800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr14:39863200-39873000	Weak transcription	Lung	lung
17	chr14:39863400-39872000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:39863400-39874000	Weak transcription	Fetal Lung	lung
19	chr14:39863400-39891600	Weak transcription	Small Intestine	intestine
20	chr14:39863800-39872600	Weak transcription	Spleen	Spleen
21	chr14:39864600-39898800	Weak transcription	Rectal Smooth Muscle	rectum
22	chr14:39865000-39872600	Weak transcription	NHLF	lung
23	chr14:39865000-39891200	Weak transcription	Psoas Muscle	Psoas
24	chr14:39865000-39898200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr14:39865200-39872000	Weak transcription	NH-A	brain
26	chr14:39865200-39872200	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:39865200-39872200	Weak transcription	HUVEC	blood vessel
28	chr14:39865200-39872600	Weak transcription	NHEK	skin
29	chr14:39865200-39878800	Weak transcription	H9 Cell Line	embryonic stem cell
30	chr14:39867200-39872800	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr14:39867400-39874200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
32	chr14:39867800-39875600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr14:39868000-39872200	Weak transcription	Fetal Intestine Small	intestine
34	chr14:39868000-39883400	Weak transcription	Thymus	Thymus
35	chr14:39868400-39873400	Weak transcription	Fetal Brain Female	brain
36	chr14:39869000-39872200	Weak transcription	Osteobl	bone
37	chr14:39869000-39872400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr14:39869000-39872400	Weak transcription	HUES6 Cell Line	embryonic stem cell
39	chr14:39869000-39872400	Weak transcription	HUES64 Cell Line	embryonic stem cell
40	chr14:39869000-39872400	Weak transcription	Fetal Stomach	stomach
41	chr14:39869000-39872800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr14:39869000-39873800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
43	chr14:39869000-39874400	Weak transcription	Pancreas	Pancrea
44	chr14:39869000-39876000	Weak transcription	A549	lung
45	chr14:39869000-39879600	Weak transcription	Sigmoid Colon	Sigmoid Colon
46	chr14:39869000-39879800	Weak transcription	Fetal Kidney	kidney
47	chr14:39869000-39883800	Weak transcription	Left Ventricle	heart
48	chr14:39869000-39886200	Weak transcription	Aorta	Aorta
49	chr14:39869000-39886200	Weak transcription	Ovary	ovary
50	chr14:39869000-39895600	Weak transcription	Hela-S3	cervix

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