Variant report

Variant	rs10147286
Chromosome Location	chr14:39696065-39696066
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39639912..39642266-chr14:39694401..39697374,2	K562	blood:
2	chr14:39687526..39690139-chr14:39695809..39697449,2	MCF-7	breast:
3	chr14:39695180..39697611-chr14:39735676..39737313,2	MCF-7	breast:
4	chr14:39648211..39650713-chr14:39694377..39696720,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100941	Chromatin interaction
ENSG00000150527	Chromatin interaction
ENSG00000258940	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10129351	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10130181	1.00[CHB][hapmap]
rs10140969	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10140997	1.00[CHB][hapmap];0.86[JPT][hapmap]
rs10142029	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10146106	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs10146622	1.00[CHB][hapmap]
rs10151920	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10220689	1.00[CHB][hapmap];0.88[JPT][hapmap]
rs10483538	1.00[CEU][hapmap]
rs12433987	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs12436095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12437261	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs17109168	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs17619960	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1998886	0.86[CHB][hapmap]
rs28495377	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28547333	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28630597	0.80[ASN][1000 genomes]
rs28770022	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2899887	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs3783291	0.82[CHB][hapmap]
rs3825549	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4902456	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4902458	1.00[CEU][hapmap];1.00[CHB][hapmap];0.88[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4902559	1.00[CHB][hapmap]
rs61998508	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61998509	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61998535	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs67311214	0.86[ASN][1000 genomes]
rs7156962	1.00[CHB][hapmap]
rs7158282	1.00[CHB][hapmap]
rs8006076	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs9322999	1.00[CHB][hapmap]
rs9805937	1.00[CEU][hapmap];1.00[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	nsv977619	chr14:39690884-39697666	Enhancers Flanking Active TSS Weak transcription	TF binding region Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39694000-39696600	Weak transcription	HepG2	liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links