Variant report

Variant	rs28547333
Chromosome Location	chr14:39681051-39681052
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10129351	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs10140969	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10147286	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10151920	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12436095	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12437261	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs17619960	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs28495377	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs28770022	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3825549	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4902456	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4902458	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs61998508	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61998509	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61998535	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs67311214	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1246	chr14:39656597-39701520	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Strong transcription	TF binding region Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39674000-39705400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr14:39679800-39682000	Enhancers	A549	lung
3	chr14:39680400-39682400	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr14:39680600-39681800	Bivalent Enhancer	HepG2	liver
5	chr14:39681000-39681400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr14:39681000-39681600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr14:39681000-39681600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr14:39681000-39681800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
9	chr14:39681000-39682000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr14:39681000-39682000	Enhancers	Hela-S3	cervix
11	chr14:39681000-39682000	Enhancers	HMEC	breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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