Variant report

Variant	rs61998535
Chromosome Location	chr14:39719698-39719699
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10129351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10140969	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10147286	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs10151920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12436095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12437261	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17619960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs28495377	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs28547333	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28630597	0.93[ASN][1000 genomes]
rs28770022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3825549	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs41317316	0.86[ASN][1000 genomes]
rs4902456	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4902458	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61998508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs61998509	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39716800-39721400	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr14:39717200-39721200	Weak transcription	Fetal Intestine Large	intestine
5	chr14:39717200-39721600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:39717400-39720800	Weak transcription	HepG2	liver
7	chr14:39718000-39719800	Strong transcription	Fetal Intestine Small	intestine
8	chr14:39718600-39728000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr14:39719400-39721600	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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