Variant report

Variant	rs3825549
Chromosome Location	chr14:39716808-39716809
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:39655214..39656857-chr14:39716747..39718592,2	K562	blood:
2	chr14:39709841..39712776-chr14:39715835..39718278,2	K562	blood:
3	chr14:39687884..39690002-chr14:39715235..39717332,2	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10129351	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10130181	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap]
rs10140969	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10140997	1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap]
rs10142029	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10146106	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs10146622	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs10147286	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs10151920	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10220689	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10483538	1.00[CEU][hapmap]
rs12433987	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12436095	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12437261	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17109168	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs17619960	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1955716	0.85[CHB][hapmap]
rs1998885	0.85[CHB][hapmap]
rs1998886	0.85[CHB][hapmap]
rs28495377	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs28547333	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs28630597	0.98[ASN][1000 genomes]
rs28770022	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2899887	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];0.85[JPT][hapmap];0.85[MEX][hapmap]
rs3783291	0.82[CHB][hapmap]
rs41317316	0.91[ASN][1000 genomes]
rs4902456	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4902458	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4902559	1.00[CHB][hapmap];0.91[CHD][hapmap];0.96[GIH][hapmap];0.85[JPT][hapmap];0.82[MEX][hapmap]
rs61998508	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61998509	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61998535	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7156962	1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs7158282	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs8006076	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[JPT][hapmap]
rs8006481	1.00[ASW][hapmap]
rs9322999	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs9805937	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1053133	chr14:39657535-39770729	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:39703600-39735400	Weak transcription	Pancreas	Pancrea
2	chr14:39704400-39734400	Weak transcription	Duodenum Mucosa	Duodenum
3	chr14:39708800-39718000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:39710000-39717400	Strong transcription	HepG2	liver
5	chr14:39711200-39719400	Strong transcription	Liver	Liver
6	chr14:39715600-39717200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr14:39715600-39717200	Enhancers	NHDF-Ad	bronchial
8	chr14:39715800-39717000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr14:39715800-39717000	Enhancers	Muscle Satellite Cultured Cells	--
10	chr14:39715800-39717200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr14:39716000-39717000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr14:39716000-39717000	Enhancers	HMEC	breast
13	chr14:39716000-39717200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr14:39716000-39717200	Strong transcription	Fetal Intestine Large	intestine
15	chr14:39716000-39717200	Enhancers	NHEK	skin
16	chr14:39716000-39718000	Weak transcription	Fetal Intestine Small	intestine
17	chr14:39716200-39717000	Enhancers	HSMM	muscle
18	chr14:39716200-39717000	Enhancers	HSMMtube	muscle
19	chr14:39716200-39717000	Enhancers	NH-A	brain
20	chr14:39716200-39717000	Enhancers	NHLF	lung
21	chr14:39716600-39717000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:39716600-39717000	Enhancers	Osteobl	bone
23	chr14:39716600-39717400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr14:39716800-39721400	Weak transcription	Pancreatic Islets	Pancreatic Islet

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