Variant report

Variant	rs62019366
Chromosome Location	chr15:43432128-43432129
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:43429691..43433219-chr15:43435573..43439921,4	K562	blood:
2	chr15:43425606..43428403-chr15:43431821..43436252,4	K562	blood:
3	chr15:43339146..43340895-chr15:43431393..43434266,2	K562	blood:

Variant related genes	Relation type
ENSG00000137842	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10851412	1.00[AMR][1000 genomes]
rs11637405	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62019378	0.86[EUR][1000 genomes]
rs62019409	0.87[EUR][1000 genomes]
rs62020752	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525461	chr15:43062548-43482127	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases
2	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
3	nsv515876	chr15:43116906-43445305	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv569240	chr15:43201109-43445305	Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
5	nsv569241	chr15:43201109-43522922	Active TSS Weak transcription ZNF genes & repeats Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv569242	chr15:43210030-43445305	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
7	nsv904136	chr15:43257475-43482127	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
8	nsv904139	chr15:43268970-43482127	Weak transcription Strong transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
9	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
10	nsv904144	chr15:43276345-43482127	Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
11	esv1802035	chr15:43370916-43487742	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
12	nsv984062	chr15:43430647-43433356	Strong transcription Weak transcription ZNF genes & repeats Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:115 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43426600-43442200	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr15:43426800-43433000	Weak transcription	A549	lung
3	chr15:43426800-43433000	Weak transcription	HSMM	muscle
4	chr15:43426800-43433400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr15:43426800-43436400	Weak transcription	Primary T cells from cord blood	blood
6	chr15:43426800-43455800	Weak transcription	Fetal Lung	lung
7	chr15:43426800-43465400	Weak transcription	Psoas Muscle	Psoas
8	chr15:43427000-43440600	Weak transcription	Fetal Heart	heart
9	chr15:43427000-43442200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr15:43427000-43442200	Weak transcription	NH-A	brain
11	chr15:43427200-43432400	Weak transcription	HUVEC	blood vessel
12	chr15:43427200-43432400	Weak transcription	NHEK	skin
13	chr15:43427200-43433200	Weak transcription	Pancreatic Islets	Pancreatic Islet
14	chr15:43427200-43436200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr15:43427200-43436400	Weak transcription	K562	blood
16	chr15:43427600-43432800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
17	chr15:43427600-43434200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
18	chr15:43427600-43434400	Strong transcription	Primary B cells from cord blood	blood
19	chr15:43427600-43475000	Weak transcription	Stomach Mucosa	stomach
20	chr15:43427800-43432600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
21	chr15:43427800-43434000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr15:43427800-43434600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
23	chr15:43427800-43435000	Strong transcription	Primary B cells from peripheral blood	blood
24	chr15:43427800-43435600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr15:43427800-43435600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
26	chr15:43427800-43448400	Weak transcription	Fetal Kidney	kidney
27	chr15:43428000-43433800	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr15:43428000-43445600	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr15:43428200-43433600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
30	chr15:43428200-43433800	Strong transcription	Rectal Mucosa Donor 31	rectum
31	chr15:43428200-43434000	Strong transcription	Monocytes-CD14+_RO01746	blood
32	chr15:43428200-43434200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr15:43428400-43432600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr15:43428400-43433000	Strong transcription	Primary hematopoietic stem cells	blood
35	chr15:43428400-43433800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
36	chr15:43428400-43433800	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr15:43428400-43434000	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr15:43428400-43434200	Strong transcription	Duodenum Mucosa	Duodenum
39	chr15:43428400-43434200	Strong transcription	Fetal Intestine Large	intestine
40	chr15:43428400-43435200	Strong transcription	Liver	Liver
41	chr15:43428600-43433000	Strong transcription	Fetal Intestine Small	intestine
42	chr15:43428600-43433400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
43	chr15:43428600-43433400	Strong transcription	Ovary	ovary
44	chr15:43428600-43433600	Strong transcription	Rectal Mucosa Donor 29	rectum
45	chr15:43428600-43434200	Strong transcription	Adipose Nuclei	Adipose
46	chr15:43428800-43433000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
47	chr15:43428800-43433200	Strong transcription	Colonic Mucosa	Colon
48	chr15:43428800-43433200	Strong transcription	Fetal Muscle Leg	muscle
49	chr15:43428800-43433600	Strong transcription	Fetal Stomach	stomach
50	chr15:43428800-43433600	Strong transcription	Left Ventricle	heart

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