Variant report

Variant	rs62019409
Chromosome Location	chr15:43545578-43545579
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11637405	0.87[EUR][1000 genomes]
rs11637653	0.81[EUR][1000 genomes]
rs62019366	0.87[EUR][1000 genomes]
rs62019378	0.92[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044522	chr15:43115348-43658417	Strong transcription Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases
2	nsv1044508	chr15:43270637-43658417	Weak transcription Genic enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:43538000-43546600	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr15:43542200-43546200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr15:43542600-43545800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr15:43542800-43545800	Weak transcription	Primary hematopoietic stem cells	blood
5	chr15:43544000-43545600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr15:43544200-43545600	Weak transcription	Esophagus	oesophagus
7	chr15:43544800-43546200	Flanking Active TSS	GM12878-XiMat	blood
8	chr15:43545000-43546400	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr15:43545000-43546600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr15:43545000-43546600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr15:43545200-43546600	Enhancers	Primary B cells from peripheral blood	blood
12	chr15:43545200-43546600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr15:43545200-43547000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:43545400-43546600	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
15	chr15:43545400-43546600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
16	chr15:43545400-43546800	Enhancers	HMEC	breast
17	chr15:43545400-43546800	Enhancers	NHEK	skin
18	chr15:43545400-43547000	Enhancers	Breast Myoepithelial Primary Cells	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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