Variant report

Variant	rs62021538
Chromosome Location	chr16:46410012-46410013
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351345	chr16:46385802-46460549	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
2	esv3415772	chr16:46385802-46461249	ZNF genes & repeats Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
3	esv3348821	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
4	esv3362417	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
5	esv3418529	chr16:46385802-46461449	Weak transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
6	esv3433355	chr16:46385802-46461449	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
7	nsv482466	chr16:46385802-46508907	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
8	nsv572449	chr16:46385922-46443964	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
9	nsv572450	chr16:46385922-46450037	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
10	nsv572451	chr16:46385922-46452565	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
11	nsv572452	chr16:46385922-46498901	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
12	nsv572453	chr16:46385922-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
13	nsv572454	chr16:46385922-46499821	Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
14	nsv572455	chr16:46385922-46500009	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
15	nsv572456	chr16:46385922-46500195	ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
16	nsv572457	chr16:46385922-46500302	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
17	nsv572458	chr16:46385922-46500451	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
18	nsv433447	chr16:46386457-46479625	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
19	nsv572459	chr16:46386457-46539392	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	n/a
20	esv1799780	chr16:46386457-46875496	Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	45 gene(s)	inside rSNPs	diseases
21	esv3379793	chr16:46393636-46413404	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Flanking Active TSS	n/a	n/a	inside rSNPs	n/a
22	esv4026	chr16:46397519-46430215	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
23	esv3734	chr16:46398845-46419471	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
24	esv4857	chr16:46400687-46427079	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
25	esv1813432	chr16:46402997-46499280	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
26	esv1809860	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
27	esv1847123	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
28	esv1850910	chr16:46402997-46499613	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
29	esv1847006	chr16:46402997-46500451	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Enhancers Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
30	esv4493	chr16:46403575-46434938	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
31	esv3395980	chr16:46405094-46412703	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
32	esv3338957	chr16:46406472-46412063	ZNF genes & repeats Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	n/a	n/a	inside rSNPs	n/a
33	esv8215	chr16:46406546-46411999	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	n/a	n/a	inside rSNPs	n/a
34	esv995719	chr16:46409302-46454077	Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a
35	esv12819	chr16:46409917-46456838	ZNF genes & repeats Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:46398000-46414400	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr16:46398000-46416000	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr16:46404800-46414200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:46404800-46414200	ZNF genes & repeats	Primary T cells effector/memory enriched fromperipheralblood	blood
5	chr16:46404800-46414200	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum
6	chr16:46404800-46414200	ZNF genes & repeats	Sigmoid Colon	Sigmoid Colon
7	chr16:46404800-46414200	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
8	chr16:46404800-46414400	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
9	chr16:46404800-46414400	ZNF genes & repeats	HUES48 Cell Line	embryonic stem cell
10	chr16:46404800-46414400	ZNF genes & repeats	Primary B cells from cord blood	blood
11	chr16:46404800-46414400	ZNF genes & repeats	Adipose Nuclei	Adipose
12	chr16:46404800-46414400	ZNF genes & repeats	Dnd41	blood
13	chr16:46404800-46414600	ZNF genes & repeats	Primary hematopoietic stem cells short term culture	blood
14	chr16:46404800-46416000	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
15	chr16:46404800-46417600	ZNF genes & repeats	Primary hematopoietic stem cells	blood
16	chr16:46404800-46418800	ZNF genes & repeats	Primary T cells from cord blood	blood
17	chr16:46404800-46421600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
18	chr16:46404800-46430400	ZNF genes & repeats	HUES6 Cell Line	embryonic stem cell
19	chr16:46406200-46414200	ZNF genes & repeats	Gastric	stomach
20	chr16:46407600-46414200	ZNF genes & repeats	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr16:46407600-46414200	ZNF genes & repeats	Duodenum Mucosa	Duodenum
22	chr16:46407600-46414400	ZNF genes & repeats	Liver	Liver
23	chr16:46407800-46414200	ZNF genes & repeats	Psoas Muscle	Psoas
24	chr16:46408600-46410600	ZNF genes & repeats	HepG2	liver
25	chr16:46408600-46414200	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr16:46408600-46414200	ZNF genes & repeats	HUVEC	blood vessel
27	chr16:46408800-46414200	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
28	chr16:46408800-46414200	ZNF genes & repeats	Brain Substantia Nigra	brain
29	chr16:46408800-46414200	ZNF genes & repeats	Fetal Heart	heart
30	chr16:46408800-46414200	ZNF genes & repeats	Fetal Lung	lung
31	chr16:46409000-46410400	ZNF genes & repeats	Brain Dorsolateral Prefrontal Cortex	brain
32	chr16:46409000-46412000	ZNF genes & repeats	Pancreatic Islets	Pancreatic Islet
33	chr16:46409000-46412400	ZNF genes & repeats	Primary T helper naive cells from peripheral blood	blood
34	chr16:46409000-46412800	ZNF genes & repeats	K562	blood
35	chr16:46409000-46414200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 2	blood
36	chr16:46409000-46414200	ZNF genes & repeats	Brain Cingulate Gyrus	brain
37	chr16:46409000-46414200	ZNF genes & repeats	Fetal Brain Male	brain
38	chr16:46409000-46414200	ZNF genes & repeats	Rectal Mucosa Donor 31	rectum
39	chr16:46409000-46414200	ZNF genes & repeats	Skeletal Muscle Female	skeletal muscle
40	chr16:46409000-46414200	ZNF genes & repeats	NH-A	brain
41	chr16:46409200-46412600	ZNF genes & repeats	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr16:46409200-46412800	ZNF genes & repeats	Muscle Satellite Cultured Cells	--
43	chr16:46409200-46413000	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
44	chr16:46409200-46414200	ZNF genes & repeats	iPS-15b Cell Line	embryonic stem cell
45	chr16:46409200-46414200	ZNF genes & repeats	Primary T killer naive cells fromperipheralblood	blood
46	chr16:46409200-46414200	ZNF genes & repeats	Brain Hippocampus Middle	brain
47	chr16:46409200-46414200	ZNF genes & repeats	GM12878-XiMat	blood
48	chr16:46409400-46412400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
49	chr16:46409400-46414200	ZNF genes & repeats	Primary T helper memory cells from peripheral blood 1	blood
50	chr16:46409400-46414200	ZNF genes & repeats	Colon Smooth Muscle	Colon

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