Variant report

Variant	rs62023152
Chromosome Location	chr15:93554703-93554704
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:93547722..93549714-chr15:93553501..93555795,2	MCF-7	breast:
2	chr15:93361274..93362961-chr15:93553071..93555418,2	MCF-7	breast:
3	chr15:93553525..93555690-chr15:93557526..93560088,2	MCF-7	breast:
4	chr15:93456642..93459618-chr15:93553215..93555161,2	K562	blood:
5	chr15:93542894..93544665-chr15:93552716..93554792,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-RGMA-10	chr15:93554029-93554874	l_1226_chr15:93554028-93633805_testes

No data

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs62023154	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6497015	0.83[EUR][1000 genomes]
rs72765626	1.00[ASN][1000 genomes]
rs72765627	1.00[ASN][1000 genomes]
rs72765629	1.00[ASN][1000 genomes]
rs72765692	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv530847	chr15:93444024-93555676	Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
6	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93493200-93571000	Strong transcription	Dnd41	blood
2	chr15:93493200-93571200	Strong transcription	Rectal Mucosa Donor 29	rectum
3	chr15:93493400-93568600	Strong transcription	Liver	Liver
4	chr15:93493400-93569600	Strong transcription	Placenta	Placenta
5	chr15:93493400-93571000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:93493400-93571000	Strong transcription	Rectal Mucosa Donor 31	rectum
7	chr15:93493600-93571400	Strong transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:93493800-93561400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr15:93493800-93571400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr15:93494000-93568200	Strong transcription	Fetal Thymus	thymus
11	chr15:93494000-93570400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
12	chr15:93494000-93570800	Strong transcription	HUES64 Cell Line	embryonic stem cell
13	chr15:93494000-93571000	Strong transcription	HUES48 Cell Line	embryonic stem cell
14	chr15:93494000-93571400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr15:93504000-93567800	Strong transcription	Primary neutrophils fromperipheralblood	blood
16	chr15:93505000-93569800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
17	chr15:93506000-93569800	Strong transcription	HepG2	liver
18	chr15:93506400-93561800	Strong transcription	A549	lung
19	chr15:93506400-93569600	Strong transcription	Fetal Muscle Trunk	muscle
20	chr15:93509600-93568000	Strong transcription	Primary B cells from cord blood	blood
21	chr15:93509600-93569600	Strong transcription	NHDF-Ad	bronchial
22	chr15:93509600-93571200	Strong transcription	Fetal Lung	lung
23	chr15:93509600-93571400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr15:93509800-93568600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr15:93509800-93572000	Strong transcription	Fetal Intestine Large	intestine
26	chr15:93512800-93560200	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr15:93512800-93567800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:93512800-93567800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
29	chr15:93512800-93568000	Strong transcription	Primary hematopoietic stem cells short term culture	blood
30	chr15:93513800-93560000	Strong transcription	Fetal Kidney	kidney
31	chr15:93514200-93561000	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr15:93514200-93570800	Strong transcription	H1 Cell Line	embryonic stem cell
33	chr15:93515000-93561000	Strong transcription	Monocytes-CD14+_RO01746	blood
34	chr15:93521200-93568200	Strong transcription	Primary hematopoietic stem cells	blood
35	chr15:93521600-93568000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
36	chr15:93521800-93569400	Strong transcription	Duodenum Smooth Muscle	Duodenum
37	chr15:93522800-93563200	Strong transcription	GM12878-XiMat	blood
38	chr15:93523000-93570600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr15:93525600-93563600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
40	chr15:93525600-93570600	Strong transcription	NH-A	brain
41	chr15:93525800-93560400	Strong transcription	Primary T helper cells PMA-I stimulated	--
42	chr15:93525800-93567000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
43	chr15:93525800-93568600	Strong transcription	HUVEC	blood vessel
44	chr15:93526000-93570400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
45	chr15:93526200-93570000	Strong transcription	NHEK	skin
46	chr15:93526600-93569800	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr15:93526800-93568000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
48	chr15:93526800-93572400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr15:93528000-93570200	Strong transcription	HMEC	breast
50	chr15:93531600-93569600	Strong transcription	K562	blood

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