Variant report

Variant	rs72765627
Chromosome Location	chr15:93572534-93572535
allele	A/C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:93566666..93569192-chr15:93570705..93573458,2	MCF-7	breast:
2	chr15:93572208..93574371-chr15:93590379..93592416,2	MCF-7	breast:
3	chr15:93571974..93576181-chr15:93579013..93582773,4	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs62023152	1.00[ASN][1000 genomes]
rs62023154	1.00[ASN][1000 genomes]
rs72765620	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs72765626	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72765629	1.00[ASN][1000 genomes]
rs72765692	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948738	chr15:93070742-93728147	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	169 gene(s)	inside rSNPs	diseases
2	nsv1049490	chr15:93134405-93591660	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	151 gene(s)	inside rSNPs	diseases
3	nsv530846	chr15:93323949-94030462	Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	153 gene(s)	inside rSNPs	diseases
4	nsv948881	chr15:93383740-93603608	Genic enhancers Strong transcription Weak transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	91 gene(s)	inside rSNPs	diseases
5	nsv917347	chr15:93444094-93586814	Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
6	nsv904500	chr15:93556442-93584615	Strong transcription Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	nsv1041668	chr15:93558188-93611598	Bivalent Enhancer Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
8	esv1835897	chr15:93568884-93589740	Strong transcription Weak transcription Genic enhancers Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
9	nsv1052724	chr15:93569701-93622666	Enhancers Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
10	nsv520601	chr15:93570723-93574819	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
11	nsv526532	chr15:93570723-93597006	Flanking Active TSS Enhancers Genic enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
12	nsv904501	chr15:93570723-93600158	Enhancers Genic enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
13	nsv904502	chr15:93570723-93600976	Enhancers Flanking Active TSS Genic enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
14	nsv525266	chr15:93570723-93602056	Weak transcription Strong transcription Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
15	nsv904503	chr15:93570723-93605090	Enhancers Strong transcription ZNF genes & repeats Weak transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
16	nsv523617	chr15:93570723-93610139	Weak transcription Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
17	nsv1043084	chr15:93572133-93598434	Strong transcription Weak transcription Enhancers Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
18	nsv542471	chr15:93572133-93598434	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS	Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:93534000-93572800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr15:93567600-93572600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr15:93567600-93573000	Enhancers	Right Atrium	heart
4	chr15:93568600-93573200	Genic enhancers	Fetal Muscle Leg	muscle
5	chr15:93568800-93572800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:93568800-93574000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
7	chr15:93569400-93574400	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:93569600-93573600	Weak transcription	K562	blood
9	chr15:93569600-93574200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr15:93569800-93572800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr15:93569800-93573000	Weak transcription	HepG2	liver
12	chr15:93569800-93573800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr15:93570000-93572600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
14	chr15:93570000-93573800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr15:93570000-93574000	Enhancers	Brain Hippocampus Middle	brain
16	chr15:93570000-93574200	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr15:93570000-93574600	Enhancers	Duodenum Smooth Muscle	Duodenum
18	chr15:93570000-93579000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
19	chr15:93570200-93586000	Weak transcription	Aorta	Aorta
20	chr15:93570400-93573800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:93570400-93585600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
22	chr15:93570400-93586400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr15:93570600-93572600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
24	chr15:93570600-93573000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
25	chr15:93570600-93574000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr15:93570600-93574200	Enhancers	Rectal Smooth Muscle	rectum
27	chr15:93570800-93572600	Weak transcription	Primary hematopoietic stem cells	blood
28	chr15:93570800-93573000	Genic enhancers	NHLF	lung
29	chr15:93570800-93573400	Weak transcription	Small Intestine	intestine
30	chr15:93570800-93573600	Enhancers	Colonic Mucosa	Colon
31	chr15:93570800-93573800	Weak transcription	H1 Cell Line	embryonic stem cell
32	chr15:93570800-93573800	Weak transcription	Fetal Kidney	kidney
33	chr15:93570800-93574000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
34	chr15:93570800-93574400	Enhancers	Liver	Liver
35	chr15:93570800-93574400	Enhancers	Brain Germinal Matrix	brain
36	chr15:93570800-93574600	Enhancers	Esophagus	oesophagus
37	chr15:93570800-93574600	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
38	chr15:93571000-93573600	Weak transcription	Dnd41	blood
39	chr15:93571000-93573800	Weak transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:93571000-93573800	Weak transcription	Hela-S3	cervix
41	chr15:93571000-93574400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:93571000-93574400	Enhancers	HMEC	breast
43	chr15:93571200-93572600	Weak transcription	Primary T helper cells fromperipheralblood	blood
44	chr15:93571200-93572800	Enhancers	Fetal Brain Male	brain
45	chr15:93571200-93573800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
46	chr15:93571200-93574000	Enhancers	Brain Angular Gyrus	brain
47	chr15:93571200-93574000	Enhancers	HUVEC	blood vessel
48	chr15:93571200-93574400	Enhancers	Pancreas	Pancrea
49	chr15:93571200-93574600	Enhancers	Brain Substantia Nigra	brain
50	chr15:93571400-93572600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links