Variant report

Variant	rs62023508
Chromosome Location	chr1:90035833-90035834
allele	A/C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10518698	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1947042	0.82[AFR][1000 genomes]
rs2414183	0.89[EUR][1000 genomes]
rs2440356	0.88[ASN][1000 genomes]
rs2440358	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440359	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2440369	0.94[AFR][1000 genomes]
rs2456495	0.86[AFR][1000 genomes]
rs28634635	0.82[AFR][1000 genomes]
rs28663272	0.82[ASN][1000 genomes]
rs6493584	0.83[EUR][1000 genomes]
rs7164144	0.97[AFR][1000 genomes]
rs8025155	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830559	chr1:90001406-90177521	Bivalent Enhancer Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:90011800-90048200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr1:90014200-90054800	Weak transcription	HUVEC	blood vessel
3	chr1:90015200-90048400	Weak transcription	Fetal Thymus	thymus
4	chr1:90016200-90040200	Weak transcription	Thymus	Thymus
5	chr1:90016600-90053200	Weak transcription	Fetal Kidney	kidney
6	chr1:90016800-90048200	Weak transcription	Gastric	stomach
7	chr1:90018200-90048200	Weak transcription	Ovary	ovary
8	chr1:90018400-90040400	Weak transcription	Fetal Intestine Large	intestine
9	chr1:90018600-90039600	Weak transcription	Duodenum Mucosa	Duodenum
10	chr1:90018600-90048600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr1:90018800-90045600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr1:90019000-90039400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr1:90019000-90047600	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr1:90019200-90040400	Weak transcription	Dnd41	blood
15	chr1:90019600-90039400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr1:90021600-90040400	Weak transcription	Fetal Intestine Small	intestine
17	chr1:90022800-90040800	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr1:90024800-90040400	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr1:90024800-90048800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:90025000-90040600	Weak transcription	Psoas Muscle	Psoas
21	chr1:90030000-90056000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr1:90030000-90059000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr1:90030200-90047600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:90030200-90063200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
25	chr1:90030800-90043400	Weak transcription	Fetal Brain Female	brain
26	chr1:90031200-90048200	Weak transcription	Right Ventricle	heart
27	chr1:90031400-90040200	Weak transcription	Left Ventricle	heart
28	chr1:90031400-90045800	Weak transcription	Lung	lung
29	chr1:90031400-90064400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr1:90031600-90097200	Weak transcription	Aorta	Aorta
31	chr1:90032200-90048600	Weak transcription	Stomach Smooth Muscle	stomach
32	chr1:90032600-90036400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr1:90032800-90039200	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr1:90032800-90039400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr1:90032800-90040400	Weak transcription	HSMMtube	muscle
36	chr1:90032800-90040600	Weak transcription	Skeletal Muscle Male	skeletal muscle
37	chr1:90032800-90044000	Weak transcription	Fetal Brain Male	brain
38	chr1:90032800-90048200	Weak transcription	H1 Cell Line	embryonic stem cell
39	chr1:90032800-90048400	Weak transcription	H9 Cell Line	embryonic stem cell
40	chr1:90033000-90039400	Weak transcription	Brain Inferior Temporal Lobe	brain
41	chr1:90033000-90044800	Weak transcription	HUES48 Cell Line	embryonic stem cell
42	chr1:90033000-90044800	Weak transcription	Primary monocytes fromperipheralblood	blood
43	chr1:90033000-90048200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
44	chr1:90033400-90039600	Weak transcription	HepG2	liver
45	chr1:90033400-90040200	Weak transcription	Liver	Liver
46	chr1:90033400-90045400	Weak transcription	Adipose Nuclei	Adipose
47	chr1:90033400-90048000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
48	chr1:90033600-90039400	Weak transcription	Monocytes-CD14+_RO01746	blood
49	chr1:90033600-90042400	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr1:90033800-90040800	Weak transcription	Brain Anterior Caudate	brain

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