Variant report

Variant	rs62035122
Chromosome Location	chr15:82402302-82402303
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1827486	0.82[AMR][1000 genomes]
rs62035107	0.82[AMR][1000 genomes]
rs62035108	0.82[AMR][1000 genomes]
rs62035121	0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833067	chr15:82234980-82450485	Weak transcription Enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
2	esv2422504	chr15:82293064-82426400	Strong transcription Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
3	nsv570242	chr15:82370616-82409727	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv528511	chr15:82391287-82404705	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv977845	chr15:82398263-82412461	Enhancers Weak transcription Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:82393600-82404000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr15:82396400-82406000	Weak transcription	Right Atrium	heart
3	chr15:82398200-82404000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr15:82398200-82414200	Weak transcription	NHLF	lung
5	chr15:82398600-82403800	Weak transcription	NHDF-Ad	bronchial
6	chr15:82399000-82452200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr15:82399400-82413400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr15:82399400-82413400	Weak transcription	HMEC	breast
9	chr15:82399600-82403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr15:82399600-82413400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr15:82399600-82413600	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr15:82400800-82403000	Enhancers	K562	blood
13	chr15:82401600-82405600	Weak transcription	HSMM	muscle
14	chr15:82402200-82402400	Enhancers	Primary hematopoietic stem cells short term culture	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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