Variant report

Variant	rs62043342
Chromosome Location	chr16:79758157-79758158
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:79757405..79759517-chr16:79760609..79762850,3	MCF-7	breast:
2	chr16:79757858..79761276-chr16:79764812..79767945,3	K562	blood:
3	chr16:79757085..79759358-chr16:79764740..79767678,2	K562	blood:
4	chr16:79757670..79760367-chr16:79760765..79762545,2	K562	blood:

Extended variants
information (count: 53 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:47)

rs_ID	r²[population]
rs28414130	0.95[ASN][1000 genomes]
rs28687312	0.95[ASN][1000 genomes]
rs4458007	0.95[ASN][1000 genomes]
rs55981441	0.90[ASN][1000 genomes]
rs55993612	0.90[ASN][1000 genomes]
rs56006814	0.83[AFR][1000 genomes]
rs56052219	0.83[AFR][1000 genomes]
rs56119147	0.90[ASN][1000 genomes]
rs62041260	0.80[ASN][1000 genomes]
rs62041304	1.00[AFR][1000 genomes];0.85[ASN][1000 genomes]
rs62041307	0.83[AFR][1000 genomes]
rs62041308	0.83[AFR][1000 genomes]
rs62041309	0.83[AFR][1000 genomes]
rs62041310	0.83[AFR][1000 genomes]
rs62041311	0.83[AFR][1000 genomes]
rs62041312	0.83[AFR][1000 genomes]
rs62041316	0.83[AFR][1000 genomes]
rs62041317	0.83[AFR][1000 genomes]
rs62041318	0.83[AFR][1000 genomes]
rs62041319	0.83[AFR][1000 genomes]
rs62041320	0.83[AFR][1000 genomes]
rs62041323	0.83[AFR][1000 genomes]
rs62041324	0.83[AFR][1000 genomes]
rs62041325	0.83[AFR][1000 genomes]
rs62041326	0.83[AFR][1000 genomes]
rs62041327	0.83[AFR][1000 genomes]
rs62041339	0.83[AFR][1000 genomes]
rs62041344	0.83[AFR][1000 genomes]
rs62041345	0.83[AFR][1000 genomes]
rs62041346	0.83[AFR][1000 genomes]
rs62041348	0.83[AFR][1000 genomes]
rs62041349	0.83[AFR][1000 genomes]
rs62043341	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62043343	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62043344	0.83[AFR][1000 genomes]
rs62043346	0.95[ASN][1000 genomes]
rs62043347	0.95[ASN][1000 genomes]
rs62043348	0.95[ASN][1000 genomes]
rs62043349	0.95[ASN][1000 genomes]
rs62043352	0.95[ASN][1000 genomes]
rs62043353	0.95[ASN][1000 genomes]
rs62043354	0.95[ASN][1000 genomes]
rs62043355	0.86[AFR][1000 genomes];0.95[ASN][1000 genomes]
rs62043356	0.95[ASN][1000 genomes]
rs62043357	0.95[ASN][1000 genomes]
rs62043359	0.90[ASN][1000 genomes]
rs9927548	0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	esv3405164	chr16:79754351-79759149	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79748200-79760400	Enhancers	Fetal Intestine Small	intestine
2	chr16:79748400-79760800	Enhancers	Fetal Intestine Large	intestine
3	chr16:79754000-79759600	Enhancers	Duodenum Mucosa	Duodenum
4	chr16:79756000-79758600	Weak transcription	Fetal Lung	lung
5	chr16:79756400-79758600	Weak transcription	Fetal Muscle Leg	muscle
6	chr16:79756800-79774200	Weak transcription	Ovary	ovary
7	chr16:79757200-79759200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr16:79757200-79759400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr16:79757400-79758200	Enhancers	Stomach Mucosa	stomach
10	chr16:79757400-79759200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:79757600-79758200	Enhancers	H1 Cell Line	embryonic stem cell
12	chr16:79757600-79758200	Enhancers	iPS-18 Cell Line	embryonic stem cell
13	chr16:79757600-79758200	Active TSS	iPS-20b Cell Line	embryonic stem cell
14	chr16:79757600-79758200	Enhancers	HepG2	liver
15	chr16:79757600-79758400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:79757600-79759000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:79757600-79759600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr16:79757800-79758200	Enhancers	H9 Cell Line	embryonic stem cell
19	chr16:79757800-79758200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr16:79757800-79758200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr16:79757800-79758200	Flanking Active TSS	Liver	Liver
22	chr16:79757800-79759000	Weak transcription	Fetal Muscle Trunk	muscle
23	chr16:79758000-79759000	Weak transcription	Pancreas	Pancrea
24	chr16:79758000-79760200	Weak transcription	Gastric	stomach

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