Variant report

Variant	rs62043344
Chromosome Location	chr16:79766555-79766556
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:79757085..79759358-chr16:79764740..79767678,2	K562	blood:
2	chr16:79757858..79761276-chr16:79764812..79767945,3	K562	blood:

Extended variants
information (count: 54 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs17690030	0.91[EUR][1000 genomes]
rs28414130	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28687312	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4458007	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs55981441	0.91[EUR][1000 genomes]
rs55993612	0.91[EUR][1000 genomes]
rs56006814	1.00[AFR][1000 genomes]
rs56052219	1.00[AFR][1000 genomes]
rs56119147	0.91[EUR][1000 genomes]
rs62041260	0.91[EUR][1000 genomes]
rs62041303	0.91[EUR][1000 genomes]
rs62041304	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs62041307	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs62041308	1.00[AFR][1000 genomes]
rs62041309	1.00[AFR][1000 genomes]
rs62041310	1.00[AFR][1000 genomes]
rs62041311	1.00[AFR][1000 genomes]
rs62041312	1.00[AFR][1000 genomes]
rs62041316	1.00[AFR][1000 genomes]
rs62041317	1.00[AFR][1000 genomes]
rs62041318	1.00[AFR][1000 genomes]
rs62041319	1.00[AFR][1000 genomes]
rs62041320	1.00[AFR][1000 genomes]
rs62041323	1.00[AFR][1000 genomes]
rs62041324	1.00[AFR][1000 genomes]
rs62041325	1.00[AFR][1000 genomes]
rs62041326	1.00[AFR][1000 genomes]
rs62041327	1.00[AFR][1000 genomes]
rs62041339	1.00[AFR][1000 genomes]
rs62041344	1.00[AFR][1000 genomes]
rs62041345	1.00[AFR][1000 genomes]
rs62041346	1.00[AFR][1000 genomes]
rs62041348	1.00[AFR][1000 genomes]
rs62041349	1.00[AFR][1000 genomes]
rs62043341	0.83[AFR][1000 genomes]
rs62043342	0.83[AFR][1000 genomes]
rs62043343	0.83[AFR][1000 genomes]
rs62043346	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62043347	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62043348	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62043349	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs62043352	0.91[EUR][1000 genomes]
rs62043353	0.91[EUR][1000 genomes]
rs62043354	0.91[EUR][1000 genomes]
rs62043355	0.91[EUR][1000 genomes]
rs62043356	0.91[EUR][1000 genomes]
rs62043357	0.91[EUR][1000 genomes]
rs62043358	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62043359	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833297	chr16:79732501-79920419	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79756800-79774200	Weak transcription	Ovary	ovary
2	chr16:79765800-79767800	Weak transcription	Fetal Intestine Small	intestine

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