Variant report

Variant	rs620505
Chromosome Location	chr13:86313653-86313654
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1337280	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs1890056	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1890057	0.81[AFR][1000 genomes]
rs2039653	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs598938	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs602544	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs624094	0.83[AMR][1000 genomes]
rs632003	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs669945	0.85[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs677907	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs9547349	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1037563	chr13:85830511-86414012	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv832668	chr13:86234885-86364254	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1044417	chr13:86239152-86344862	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv976270	chr13:86306573-86332392	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:86313000-86318200	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr13:86313400-86313800	Enhancers	HUES6 Cell Line	embryonic stem cell
3	chr13:86313400-86315400	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr13:86313600-86314400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr13:86313600-86314400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr13:86313600-86315000	Weak transcription	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links