Variant report

Variant	rs62053192
Chromosome Location	chr16:72993925-72993926
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:72868452..72870276-chr16:72992902..72994788,3	MCF-7	breast:
2	chr16:72865539..72868263-chr16:72993679..72995646,2	MCF-7	breast:
3	chr16:72962092..72966438-chr16:72993078..72996652,5	MCF-7	breast:
4	chr16:72962764..72965612-chr16:72992330..72995906,3	MCF-7	breast:
5	chr16:72987229..72991239-chr16:72992488..72995429,4	K562	blood:
6	chr16:72993373..72995367-chr16:73001879..73004852,2	MCF-7	breast:

rs_ID	r²[population]
rs62053190	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62053191	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62053193	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62053194	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62053220	0.88[EUR][1000 genomes]

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72973000-72995400	Weak transcription	Brain Angular Gyrus	brain
2	chr16:72973400-73006400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:72980200-72995400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:72980400-72997600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:72982200-72996200	Weak transcription	Small Intestine	intestine
6	chr16:72982600-72994600	Weak transcription	Fetal Heart	heart
7	chr16:72984800-72995200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr16:72985000-72994800	Weak transcription	Dnd41	blood
9	chr16:72985000-72995000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:72987200-72997800	Weak transcription	Fetal Kidney	kidney
11	chr16:72987200-73012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:72987600-72994800	Strong transcription	Fetal Stomach	stomach
13	chr16:72987600-72995400	Weak transcription	NHDF-Ad	bronchial
14	chr16:72987600-72997600	Weak transcription	NH-A	brain
15	chr16:72987600-72997800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:72987600-72998000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:72987800-72994200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr16:72988000-72994600	Strong transcription	Fetal Intestine Small	intestine
19	chr16:72989400-72997400	Strong transcription	HepG2	liver
20	chr16:72989600-72994600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:72990000-72994000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr16:72990000-72994200	Strong transcription	Placenta	Placenta
23	chr16:72990000-72994400	Strong transcription	A549	lung
24	chr16:72990200-72994000	Strong transcription	Fetal Muscle Trunk	muscle
25	chr16:72990400-72994800	Weak transcription	Psoas Muscle	Psoas
26	chr16:72990400-72994800	Weak transcription	Right Atrium	heart
27	chr16:72990600-72994800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr16:72990800-72994200	Strong transcription	Stomach Smooth Muscle	stomach
29	chr16:72990800-72994400	Strong transcription	Fetal Lung	lung
30	chr16:72991000-72994800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr16:72991000-72995400	Weak transcription	HUVEC	blood vessel
32	chr16:72991200-72994000	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr16:72991200-72994000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr16:72991200-72994000	Strong transcription	Gastric	stomach
35	chr16:72991200-72994000	Strong transcription	Left Ventricle	heart
36	chr16:72991200-72994000	Strong transcription	Rectal Mucosa Donor 31	rectum
37	chr16:72991200-72994200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:72991200-72994200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
39	chr16:72991200-72994200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
40	chr16:72991200-72994200	Strong transcription	Esophagus	oesophagus
41	chr16:72991200-72994200	Strong transcription	Fetal Muscle Leg	muscle
42	chr16:72991200-72994200	Strong transcription	Lung	lung
43	chr16:72991200-72994200	Strong transcription	Skeletal Muscle Male	skeletal muscle
44	chr16:72991200-72994400	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr16:72991200-72994600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
46	chr16:72991200-72994600	Strong transcription	NHLF	lung
47	chr16:72991200-72994600	Strong transcription	Osteobl	bone
48	chr16:72991400-72994000	Strong transcription	Right Ventricle	heart
49	chr16:72991400-72994200	Strong transcription	Colonic Mucosa	Colon
50	chr16:72991400-72994400	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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