Variant report

Variant	rs62053194
Chromosome Location	chr16:72994580-72994581
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:72868452..72870276-chr16:72992902..72994788,3	MCF-7	breast:
2	chr16:72994357..72996915-chr16:73080316..73082702,2	MCF-7	breast:
3	chr16:72865539..72868263-chr16:72993679..72995646,2	MCF-7	breast:
4	chr16:72962092..72966438-chr16:72993078..72996652,5	MCF-7	breast:
5	chr16:72962764..72965612-chr16:72992330..72995906,3	MCF-7	breast:
6	chr16:72959345..72961782-chr16:72994150..72996380,2	MCF-7	breast:
7	chr16:72987229..72991239-chr16:72992488..72995429,4	K562	blood:
8	chr16:72993373..72995367-chr16:73001879..73004852,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000140836	Chromatin interaction

rs_ID	r²[population]
rs62053190	1.00[EUR][1000 genomes]
rs62053191	0.98[EUR][1000 genomes]
rs62053192	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62053193	0.98[EUR][1000 genomes]
rs62053220	0.86[EUR][1000 genomes]

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:72973000-72995400	Weak transcription	Brain Angular Gyrus	brain
2	chr16:72973400-73006400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr16:72980200-72995400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr16:72980400-72997600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
5	chr16:72982200-72996200	Weak transcription	Small Intestine	intestine
6	chr16:72982600-72994600	Weak transcription	Fetal Heart	heart
7	chr16:72984800-72995200	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr16:72985000-72994800	Weak transcription	Dnd41	blood
9	chr16:72985000-72995000	Weak transcription	Brain Cingulate Gyrus	brain
10	chr16:72987200-72997800	Weak transcription	Fetal Kidney	kidney
11	chr16:72987200-73012200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:72987600-72994800	Strong transcription	Fetal Stomach	stomach
13	chr16:72987600-72995400	Weak transcription	NHDF-Ad	bronchial
14	chr16:72987600-72997600	Weak transcription	NH-A	brain
15	chr16:72987600-72997800	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:72987600-72998000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr16:72988000-72994600	Strong transcription	Fetal Intestine Small	intestine
18	chr16:72989400-72997400	Strong transcription	HepG2	liver
19	chr16:72989600-72994600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr16:72990400-72994800	Weak transcription	Psoas Muscle	Psoas
21	chr16:72990400-72994800	Weak transcription	Right Atrium	heart
22	chr16:72990600-72994800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:72991000-72994800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr16:72991000-72995400	Weak transcription	HUVEC	blood vessel
25	chr16:72991200-72994600	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr16:72991200-72994600	Strong transcription	NHLF	lung
27	chr16:72991200-72994600	Strong transcription	Osteobl	bone
28	chr16:72991400-72994600	Strong transcription	Ovary	ovary
29	chr16:72992400-72995200	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr16:72992800-72997000	ZNF genes & repeats	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
31	chr16:72993000-72994800	Weak transcription	Brain Germinal Matrix	brain
32	chr16:72993400-72994600	ZNF genes & repeats	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr16:72993400-72994600	Weak transcription	HSMM	muscle
34	chr16:72993400-72995200	Weak transcription	Brain Hippocampus Middle	brain
35	chr16:72993400-72995200	Weak transcription	Brain Substantia Nigra	brain
36	chr16:72993400-72995400	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr16:72993400-72996400	Weak transcription	Fetal Brain Male	brain
38	chr16:72993400-72997800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr16:72993400-73002000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr16:72993400-73003000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr16:72993400-73019600	Weak transcription	Hela-S3	cervix
42	chr16:72993600-72994800	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr16:72993600-72995000	Weak transcription	Cortex derived primary cultured neurospheres	brain
44	chr16:72993600-72995200	Weak transcription	Pancreas	Pancrea
45	chr16:72993600-72996000	Weak transcription	Liver	Liver
46	chr16:72993600-72997200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
47	chr16:72993600-72997200	Weak transcription	Adipose Nuclei	Adipose
48	chr16:72993600-73003000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr16:72993600-73003000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr16:72993600-73003800	Weak transcription	Aorta	Aorta

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