Variant report

Variant	rs62056490
Chromosome Location	chr16:71852833-71852834
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs6499542	0.92[ASN][1000 genomes]
rs7184437	0.83[ASN][1000 genomes]
rs7187129	0.92[ASN][1000 genomes]
rs7205154	0.83[ASN][1000 genomes]
rs8044342	0.83[ASN][1000 genomes]
rs8051038	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843800-71855400	Weak transcription	Primary T cells from cord blood	blood
2	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:71844000-71859400	Weak transcription	Fetal Intestine Small	intestine
4	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
5	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr16:71851000-71855000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr16:71851000-71859600	Weak transcription	K562	blood
8	chr16:71851000-71860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr16:71851200-71862200	Weak transcription	Fetal Stomach	stomach
10	chr16:71851200-71866400	Weak transcription	HSMMtube	muscle
11	chr16:71851600-71853800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:71852200-71853000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr16:71852200-71853000	Active TSS	GM12878-XiMat	blood
14	chr16:71852200-71854000	Weak transcription	Skeletal Muscle Female	skeletal muscle
15	chr16:71852200-71855200	Weak transcription	Colon Smooth Muscle	Colon
16	chr16:71852200-71859000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr16:71852200-71861600	Weak transcription	Esophagus	oesophagus
18	chr16:71852200-71861800	Weak transcription	Fetal Muscle Leg	muscle
19	chr16:71852200-71861800	Weak transcription	HSMM	muscle
20	chr16:71852200-71866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr16:71852400-71863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr16:71852600-71853000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
23	chr16:71852600-71858000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr16:71852800-71855600	Weak transcription	Primary T cells fromperipheralblood	blood
25	chr16:71852800-71864000	Weak transcription	Osteobl	bone

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