Variant report

Variant	rs7205154
Chromosome Location	chr16:71872740-71872741
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71866917..71869031-chr16:71872572..71874143,2	MCF-7	breast:
2	chr16:71840817..71843211-chr16:71871450..71874484,3	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction
ENSG00000262140	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11075908	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11075911	0.82[EUR][1000 genomes]
rs11648353	0.81[EUR][1000 genomes]
rs11648530	0.82[EUR][1000 genomes]
rs11649672	0.96[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs12102548	0.94[AFR][1000 genomes];0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12444829	0.89[EUR][1000 genomes]
rs12447045	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12449139	0.89[EUR][1000 genomes]
rs12599192	0.85[EUR][1000 genomes]
rs12921084	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12926041	0.85[EUR][1000 genomes]
rs12926300	0.85[EUR][1000 genomes]
rs12930744	0.81[EUR][1000 genomes]
rs12935795	0.81[EUR][1000 genomes]
rs13329779	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs1834034	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1834035	0.94[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs1981874	0.98[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2018384	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs2288029	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2288031	0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2335709	0.89[EUR][1000 genomes]
rs2335710	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2335711	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2335712	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2335713	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2335714	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2335715	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs28697038	0.87[EUR][1000 genomes]
rs2878492	0.82[EUR][1000 genomes]
rs3794692	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs4788446	0.84[EUR][1000 genomes]
rs4788447	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788449	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788562	0.92[EUR][1000 genomes]
rs4788563	0.94[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788564	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788566	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788570	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788571	0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4788573	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4788576	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4788581	1.00[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs4788582	0.83[EUR][1000 genomes]
rs4788584	0.82[EUR][1000 genomes]
rs4788585	0.82[EUR][1000 genomes]
rs62053803	0.82[EUR][1000 genomes]
rs62056490	0.83[ASN][1000 genomes]
rs6499542	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6499545	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6499551	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs6499552	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs7184437	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7184486	0.90[EUR][1000 genomes]
rs7187129	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7193731	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7204708	0.81[EUR][1000 genomes]
rs8044342	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8046859	0.98[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs8050488	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs8050651	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8051038	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8057124	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8058118	0.98[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs8059053	0.89[EUR][1000 genomes]
rs8062946	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8063324	0.86[EUR][1000 genomes]
rs8063403	0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9302631	1.00[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs9302632	1.00[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs9806882	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9806905	0.80[EUR][1000 genomes]
rs9888748	0.81[EUR][1000 genomes]
rs9889011	0.82[EUR][1000 genomes]
rs9921412	0.82[EUR][1000 genomes]
rs9932922	0.96[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9934803	0.84[EUR][1000 genomes]
rs9934812	0.84[EUR][1000 genomes]
rs9937936	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71868600-71876400	Weak transcription	Fetal Kidney	kidney
2	chr16:71870000-71874000	Weak transcription	HepG2	liver
3	chr16:71870800-71879000	Weak transcription	NHEK	skin
4	chr16:71871400-71876200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr16:71871400-71879000	Weak transcription	HMEC	breast
6	chr16:71871600-71879200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
7	chr16:71871800-71876200	Weak transcription	K562	blood

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