Variant report

Variant	rs7184486
Chromosome Location	chr16:71886530-71886531
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71840076..71845074-chr16:71882668..71886861,6	K562	blood:
2	chr16:71884164..71890391-chr16:71916479..71919375,6	K562	blood:
3	chr16:71840682..71843021-chr16:71886278..71888622,2	K562	blood:
4	chr16:71884897..71886779-chr16:71887255..71889485,3	MCF-7	breast:
5	chr16:71886073..71892139-chr16:71892415..71896075,7	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction
ENSG00000102984	Chromatin interaction
ENSG00000182149	Chromatin interaction

Extended variants
information (count: 82 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:80)

rs_ID	r²[population]
rs11075908	0.92[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11075911	0.83[EUR][1000 genomes]
rs11648353	0.82[EUR][1000 genomes]
rs11648530	0.83[EUR][1000 genomes]
rs11649672	0.87[EUR][1000 genomes]
rs12102548	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs12444829	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12447045	0.92[CEU][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12449139	0.93[AFR][1000 genomes];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12599192	0.85[EUR][1000 genomes]
rs12921084	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12926041	0.85[EUR][1000 genomes]
rs12926300	0.86[EUR][1000 genomes]
rs12930744	0.83[EUR][1000 genomes]
rs12935795	0.83[EUR][1000 genomes]
rs13329779	0.90[EUR][1000 genomes]
rs1834034	0.90[EUR][1000 genomes]
rs1834035	0.87[CEU][hapmap];0.87[EUR][1000 genomes]
rs1981874	0.92[CEU][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2018384	0.87[EUR][1000 genomes]
rs2288029	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2288031	0.92[CEU][hapmap];0.96[YRI][hapmap];0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2335709	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs2335710	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2335711	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2335712	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2335713	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2335714	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2335715	0.89[AFR][1000 genomes];0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28697038	0.82[AFR][1000 genomes];0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2878492	0.83[EUR][1000 genomes]
rs3794692	0.88[EUR][1000 genomes]
rs4788447	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4788449	0.92[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4788450	0.85[YRI][hapmap]
rs4788562	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4788563	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4788564	0.92[CEU][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4788566	1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4788570	0.92[CEU][hapmap];0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4788571	0.97[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4788573	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4788576	0.92[CEU][hapmap];0.90[EUR][1000 genomes]
rs4788579	0.85[YRI][hapmap]
rs4788581	0.88[EUR][1000 genomes]
rs4788582	0.84[EUR][1000 genomes]
rs4788584	0.83[EUR][1000 genomes]
rs4788585	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs62053803	0.83[EUR][1000 genomes]
rs6499542	0.83[CEU][hapmap];0.80[EUR][1000 genomes]
rs6499545	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6499551	0.90[EUR][1000 genomes]
rs6499552	0.90[EUR][1000 genomes]
rs7184437	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7187129	0.89[AFR][1000 genomes];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7193731	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs7204708	0.92[CEU][hapmap];0.82[EUR][1000 genomes]
rs7205154	0.90[EUR][1000 genomes]
rs8044342	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8046859	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8050488	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs8050651	0.92[CEU][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap];0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8051038	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs8057124	0.88[CEU][hapmap];0.88[EUR][1000 genomes]
rs8058118	0.88[EUR][1000 genomes]
rs8059053	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs8062946	0.90[EUR][1000 genomes]
rs8063324	0.91[CEU][hapmap];0.96[YRI][hapmap];0.86[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs8063403	0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9302631	0.90[EUR][1000 genomes]
rs9302632	0.91[EUR][1000 genomes]
rs9806882	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9806905	0.83[AFR][1000 genomes]
rs9888748	0.83[EUR][1000 genomes]
rs9889011	0.83[EUR][1000 genomes]
rs9921412	0.92[CEU][hapmap];0.83[EUR][1000 genomes]
rs9932922	0.85[EUR][1000 genomes]
rs9934803	0.85[EUR][1000 genomes]
rs9934812	0.85[EUR][1000 genomes]
rs9937936	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71881000-71902200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr16:71881200-71889400	Weak transcription	Psoas Muscle	Psoas
3	chr16:71881200-71916600	Weak transcription	Small Intestine	intestine
4	chr16:71881600-71887200	Weak transcription	Fetal Heart	heart
5	chr16:71881800-71886600	Strong transcription	HUES48 Cell Line	embryonic stem cell
6	chr16:71881800-71886600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr16:71881800-71887000	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
8	chr16:71881800-71887200	Strong transcription	HUES6 Cell Line	embryonic stem cell
9	chr16:71881800-71887200	Strong transcription	Primary T cells from cord blood	blood
10	chr16:71881800-71887200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
11	chr16:71881800-71887400	Strong transcription	Fetal Intestine Large	intestine
12	chr16:71881800-71887800	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr16:71881800-71887800	Strong transcription	Sigmoid Colon	Sigmoid Colon
14	chr16:71881800-71888000	Strong transcription	NHEK	skin
15	chr16:71881800-71889200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr16:71881800-71890000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr16:71881800-71890200	Strong transcription	Placenta	Placenta
18	chr16:71881800-71890200	Strong transcription	Osteobl	bone
19	chr16:71881800-71890400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr16:71881800-71890800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr16:71881800-71890800	Strong transcription	Fetal Muscle Leg	muscle
22	chr16:71881800-71895800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr16:71881800-71897000	Strong transcription	Monocytes-CD14+_RO01746	blood
24	chr16:71881800-71899000	Strong transcription	Primary monocytes fromperipheralblood	blood
25	chr16:71881800-71902000	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:71881800-71904600	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:71881800-71914400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr16:71881800-71914600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr16:71882000-71887000	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr16:71882000-71887200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
31	chr16:71882000-71887200	Strong transcription	Duodenum Smooth Muscle	Duodenum
32	chr16:71882000-71888200	Strong transcription	Rectal Mucosa Donor 31	rectum
33	chr16:71882000-71888600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
34	chr16:71882000-71889400	Strong transcription	Brain Anterior Caudate	brain
35	chr16:71882000-71890200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
36	chr16:71882000-71890400	Strong transcription	Primary hematopoietic stem cells	blood
37	chr16:71882000-71890600	Strong transcription	H1 Cell Line	embryonic stem cell
38	chr16:71882000-71903800	Strong transcription	Brain Germinal Matrix	brain
39	chr16:71882000-71915600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr16:71882200-71887200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr16:71882200-71887600	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr16:71882200-71887800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr16:71882200-71888000	Strong transcription	H9 Cell Line	embryonic stem cell
44	chr16:71882200-71888000	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr16:71882200-71888200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
46	chr16:71882200-71888200	Strong transcription	Muscle Satellite Cultured Cells	--
47	chr16:71882200-71888400	Strong transcription	Primary neutrophils fromperipheralblood	blood
48	chr16:71882200-71889400	Strong transcription	Brain Angular Gyrus	brain
49	chr16:71882200-71890400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
50	chr16:71882400-71886600	Strong transcription	iPS-15b Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links