Variant report

Variant	rs9806882
Chromosome Location	chr16:71925511-71925512
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71924622..71927002-chr16:71953817..71955560,2	MCF-7	breast:
2	chr16:71924634..71926164-chr16:71990513..71992754,2	MCF-7	breast:
3	chr16:71825737..71827920-chr16:71925001..71926624,2	MCF-7	breast:
4	chr16:71923118..71926504-chr16:71927692..71930407,4	K562	blood:
5	chr16:71916398..71918691-chr16:71923967..71926523,2	K562	blood:
6	chr16:71925187..71928062-chr16:71954742..71956995,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000182149	Chromatin interaction
ENSG00000102984	Chromatin interaction

Extended variants
information (count: 88 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11075908	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11075911	0.89[EUR][1000 genomes]
rs11648353	0.89[EUR][1000 genomes]
rs11648530	0.89[EUR][1000 genomes]
rs11649672	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12102548	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12444829	0.97[EUR][1000 genomes]
rs12447045	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449139	0.97[EUR][1000 genomes]
rs12599192	0.91[EUR][1000 genomes]
rs12921084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12926041	0.93[EUR][1000 genomes]
rs12926300	0.91[EUR][1000 genomes]
rs12930744	0.89[EUR][1000 genomes]
rs12935795	0.88[EUR][1000 genomes]
rs13329779	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1834034	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1834035	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs1981874	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008675	0.86[EUR][1000 genomes]
rs2018384	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs2288029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288031	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335709	0.97[EUR][1000 genomes]
rs2335710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2335713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335715	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs28697038	0.95[EUR][1000 genomes]
rs2878492	0.89[EUR][1000 genomes]
rs3794692	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4788446	0.82[EUR][1000 genomes]
rs4788447	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788449	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788562	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4788563	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4788564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788566	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788571	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788576	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788581	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs4788582	0.91[EUR][1000 genomes]
rs4788584	0.89[EUR][1000 genomes]
rs4788585	0.89[EUR][1000 genomes]
rs62053803	0.89[EUR][1000 genomes]
rs6499542	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6499545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6499551	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6499552	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7184437	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7184486	0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7187129	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7193731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7204708	0.89[EUR][1000 genomes]
rs7205154	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8044342	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8046859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs8050488	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8050651	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8051038	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8054111	0.86[EUR][1000 genomes]
rs8054175	0.86[EUR][1000 genomes]
rs8054403	0.86[EUR][1000 genomes]
rs8057124	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8058118	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8059053	0.97[EUR][1000 genomes]
rs8062946	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063324	0.94[EUR][1000 genomes]
rs8063403	0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9302631	1.00[AFR][1000 genomes];0.99[EUR][1000 genomes]
rs9302632	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9806905	0.87[EUR][1000 genomes]
rs9888748	0.88[EUR][1000 genomes]
rs9889011	0.88[EUR][1000 genomes]
rs9921412	0.89[EUR][1000 genomes]
rs9932922	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9934803	0.91[EUR][1000 genomes]
rs9934812	0.91[EUR][1000 genomes]
rs9937936	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv1056439	chr16:71916498-72051144	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1055854	chr16:71922144-72082886	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv906893	chr16:71922663-71988728	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71918600-71927800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr16:71919200-71927800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr16:71919200-71927800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr16:71919200-71927800	Weak transcription	Liver	Liver
5	chr16:71919200-71927800	Weak transcription	Hela-S3	cervix
6	chr16:71919200-71928000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr16:71919600-71927600	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr16:71919600-71927800	Weak transcription	Primary T helper cells PMA-I stimulated	--
9	chr16:71919800-71927600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr16:71920000-71927600	Weak transcription	Duodenum Mucosa	Duodenum
11	chr16:71923800-71928200	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:71924400-71927800	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:71924600-71927800	Weak transcription	Primary B cells from cord blood	blood
14	chr16:71924600-71927800	Weak transcription	Placenta	Placenta
15	chr16:71924600-71928200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr16:71924800-71927800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
17	chr16:71925000-71927800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr16:71925000-71927800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr16:71925200-71927800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr16:71925200-71927800	Weak transcription	HUES6 Cell Line	embryonic stem cell
21	chr16:71925200-71927800	Weak transcription	Rectal Mucosa Donor 31	rectum
22	chr16:71925200-71928000	Weak transcription	Stomach Mucosa	stomach
23	chr16:71925400-71925600	Enhancers	A549	lung
24	chr16:71925400-71925600	Enhancers	HepG2	liver
25	chr16:71925400-71925600	Enhancers	K562	blood
26	chr16:71925400-71927800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
27	chr16:71925400-71927800	Weak transcription	Fetal Thymus	thymus
28	chr16:71925400-71928000	Weak transcription	HUES48 Cell Line	embryonic stem cell
29	chr16:71925400-71928000	Weak transcription	iPS-15b Cell Line	embryonic stem cell

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