Variant report

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs11075908	0.81[EUR][1000 genomes]
rs12447045	0.81[EUR][1000 genomes]
rs12921084	0.85[EUR][1000 genomes]
rs13329779	0.81[EUR][1000 genomes]
rs2288029	0.81[EUR][1000 genomes]
rs2288031	0.82[EUR][1000 genomes]
rs2335710	0.82[EUR][1000 genomes]
rs2335711	0.84[EUR][1000 genomes]
rs2335712	0.82[EUR][1000 genomes]
rs2335713	0.84[EUR][1000 genomes]
rs2335714	0.82[EUR][1000 genomes]
rs2335715	0.84[EUR][1000 genomes]
rs4788445	0.83[EUR][1000 genomes]
rs4788447	0.83[EUR][1000 genomes]
rs4788449	0.81[EUR][1000 genomes]
rs4788562	0.80[EUR][1000 genomes]
rs4788564	0.81[EUR][1000 genomes]
rs4788566	0.81[EUR][1000 genomes]
rs4788570	0.82[EUR][1000 genomes]
rs4788571	0.82[EUR][1000 genomes]
rs4788573	0.82[EUR][1000 genomes]
rs4788576	0.80[EUR][1000 genomes]
rs6499542	0.97[EUR][1000 genomes]
rs6499545	0.81[EUR][1000 genomes]
rs6499551	0.80[EUR][1000 genomes]
rs6499552	0.81[EUR][1000 genomes]
rs7184437	0.83[EUR][1000 genomes]
rs7187129	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs7193731	0.82[EUR][1000 genomes]
rs7205154	0.84[EUR][1000 genomes]
rs8044342	0.84[EUR][1000 genomes]
rs8046859	0.81[EUR][1000 genomes]
rs8050651	0.84[EUR][1000 genomes]
rs8051038	0.84[EUR][1000 genomes]
rs8057124	0.80[EUR][1000 genomes]
rs8062946	0.81[EUR][1000 genomes]
rs8063403	0.81[EUR][1000 genomes]
rs9302631	0.81[EUR][1000 genomes]
rs9806882	0.82[EUR][1000 genomes]
rs9924339	0.93[EUR][1000 genomes]
rs9937936	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr16:71844000-71859400	Weak transcription	Fetal Intestine Small	intestine
3	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
4	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr16:71851000-71859600	Weak transcription	K562	blood
6	chr16:71851000-71860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr16:71851200-71862200	Weak transcription	Fetal Stomach	stomach
8	chr16:71851200-71866400	Weak transcription	HSMMtube	muscle
9	chr16:71852200-71859000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr16:71852200-71861600	Weak transcription	Esophagus	oesophagus
11	chr16:71852200-71861800	Weak transcription	Fetal Muscle Leg	muscle
12	chr16:71852200-71861800	Weak transcription	HSMM	muscle
13	chr16:71852200-71866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr16:71852400-71863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr16:71852600-71858000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr16:71852800-71864000	Weak transcription	Osteobl	bone
17	chr16:71853200-71860200	Weak transcription	GM12878-XiMat	blood
18	chr16:71854800-71861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr16:71856000-71861400	Weak transcription	Psoas Muscle	Psoas

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