Variant report

Variant	rs12921084
Chromosome Location	chr16:71880965-71880966
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:14)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:14 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:71879516..71883331-chr16:71913609..71918904,8	MCF-7	breast:
2	chr16:71841032..71844957-chr16:71878188..71881982,18	MCF-7	breast:
3	chr16:71840441..71845295-chr16:71875076..71881716,14	K562	blood:
4	chr16:71756009..71758513-chr16:71878989..71881221,2	K562	blood:
5	chr16:71878736..71881297-chr20:57268088..57270906,2	MCF-7	breast:
6	chr16:71879784..71882644-chr16:71915890..71918554,5	K562	blood:
7	chr16:71841284..71844520-chr16:71878157..71881366,4	K562	blood:
8	chr16:71879784..71882644-chr16:71915005..71918554,5	K562	blood:
9	chr16:71756649..71759449-chr16:71879809..71882216,3	MCF-7	breast:
10	chr16:71879510..71881419-chr16:72127750..72129828,2	MCF-7	breast:
11	chr16:71879026..71881212-chr16:71914841..71917763,3	MCF-7	breast:
12	chr16:71878378..71882676-chr16:71918678..71922110,3	K562	blood:
13	chr16:71755537..71758357-chr16:71878950..71881033,2	K562	blood:
14	chr16:71841846..71843774-chr16:71878337..71881293,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction
ENSG00000140829	Chromatin interaction
ENSG00000261765	Chromatin interaction
ENSG00000140830	Chromatin interaction
ENSG00000182149	Chromatin interaction
ENSG00000215440	Chromatin interaction
ENSG00000261513	Chromatin interaction
ENSG00000102984	Chromatin interaction
ENSG00000040199	Chromatin interaction

Extended variants
information (count: 85 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs11075908	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11075911	0.84[EUR][1000 genomes]
rs11648353	0.84[EUR][1000 genomes]
rs11648530	0.84[EUR][1000 genomes]
rs11649672	0.96[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12102548	0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12444829	0.91[EUR][1000 genomes]
rs12447045	0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12449139	0.92[EUR][1000 genomes]
rs12599192	0.87[EUR][1000 genomes]
rs12926041	0.88[EUR][1000 genomes]
rs12926300	0.87[EUR][1000 genomes]
rs12930744	0.84[EUR][1000 genomes]
rs12935795	0.83[EUR][1000 genomes]
rs13329779	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1834034	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1834035	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1981874	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2008675	0.81[EUR][1000 genomes]
rs2018384	0.86[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2288029	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2288031	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2335709	0.92[EUR][1000 genomes]
rs2335710	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2335711	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2335712	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2335713	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2335714	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2335715	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28697038	0.89[EUR][1000 genomes]
rs2878492	0.84[EUR][1000 genomes]
rs3794692	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4788446	0.85[EUR][1000 genomes]
rs4788447	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788449	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788562	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs4788563	0.94[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788564	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788566	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788570	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788571	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4788573	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788576	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4788581	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4788582	0.85[EUR][1000 genomes]
rs4788584	0.84[EUR][1000 genomes]
rs4788585	0.84[EUR][1000 genomes]
rs62053803	0.84[EUR][1000 genomes]
rs6499542	0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6499545	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6499551	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6499552	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7184437	0.98[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7184486	0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7187129	0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7193731	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7204708	0.84[EUR][1000 genomes]
rs7205154	1.00[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8044342	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8046859	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8050488	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs8050651	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8051038	0.82[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8054111	0.81[EUR][1000 genomes]
rs8054175	0.81[EUR][1000 genomes]
rs8054403	0.81[EUR][1000 genomes]
rs8057124	1.00[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8058118	0.98[AFR][1000 genomes];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs8059053	0.91[EUR][1000 genomes]
rs8062946	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8063324	0.89[EUR][1000 genomes]
rs8063403	0.93[EUR][1000 genomes]
rs9302631	1.00[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs9302632	1.00[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs9806882	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9806905	0.83[EUR][1000 genomes]
rs9888748	0.83[EUR][1000 genomes]
rs9889011	0.83[EUR][1000 genomes]
rs9921412	0.84[EUR][1000 genomes]
rs9932922	0.96[AFR][1000 genomes];0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs9934803	0.86[EUR][1000 genomes]
rs9934812	0.86[EUR][1000 genomes]
rs9937936	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71879000-71881000	Active TSS	ES-I3 Cell Line	embryonic stem cell
2	chr16:71879000-71881000	Active TSS	H1 Cell Line	embryonic stem cell
3	chr16:71879000-71881000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:71879000-71881000	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr16:71879000-71881000	Active TSS	Breast Myoepithelial Primary Cells	Breast
6	chr16:71879000-71881000	Active TSS	Fetal Kidney	kidney
7	chr16:71879000-71881400	Active TSS	HUES6 Cell Line	embryonic stem cell
8	chr16:71879000-71881400	Active TSS	HUES64 Cell Line	embryonic stem cell
9	chr16:71879200-71881000	Active TSS	H9 Cell Line	embryonic stem cell
10	chr16:71879200-71881000	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr16:71879200-71881000	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr16:71879200-71881000	Active TSS	Right Ventricle	heart
13	chr16:71879200-71881200	Active TSS	Psoas Muscle	Psoas
14	chr16:71879400-71881000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
15	chr16:71879400-71881000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
16	chr16:71879400-71881000	Active TSS	Ovary	ovary
17	chr16:71879400-71881000	Active TSS	Right Atrium	heart
18	chr16:71879400-71881000	Active TSS	Stomach Mucosa	stomach
19	chr16:71879400-71881200	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
20	chr16:71879400-71881400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr16:71879600-71881200	Active TSS	Fetal Muscle Trunk	muscle
22	chr16:71879600-71881400	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr16:71879800-71881400	Active TSS	Stomach Smooth Muscle	stomach
24	chr16:71880200-71881000	Flanking Active TSS	Primary B cells from peripheral blood	blood
25	chr16:71880200-71881000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
26	chr16:71880200-71881200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr16:71880200-71881200	Flanking Active TSS	Primary T cells from cord blood	blood
28	chr16:71880200-71881200	Flanking Active TSS	Primary hematopoietic stem cells	blood
29	chr16:71880200-71881200	Flanking Active TSS	Liver	Liver
30	chr16:71880200-71881200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr16:71880200-71881400	Flanking Active TSS	Primary B cells from cord blood	blood
32	chr16:71880200-71881400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
33	chr16:71880200-71881400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr16:71880400-71881000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr16:71880400-71881000	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
36	chr16:71880400-71881000	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
37	chr16:71880400-71881000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
38	chr16:71880400-71881200	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr16:71880400-71881200	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
40	chr16:71880400-71881200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr16:71880400-71881200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
42	chr16:71880400-71881200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr16:71880400-71881200	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
44	chr16:71880400-71881200	Flanking Active TSS	Duodenum Mucosa	Duodenum
45	chr16:71880400-71881200	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
46	chr16:71880400-71881200	Flanking Active TSS	Rectal Smooth Muscle	rectum
47	chr16:71880400-71881200	Flanking Active TSS	HUVEC	blood vessel
48	chr16:71880400-71881400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr16:71880400-71881400	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr16:71880400-71881400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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