Variant report

Variant	rs11075908
Chromosome Location	chr16:71928850-71928851
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TAF1	chr16:71928538-71929822	MCF-7	breast:	n/a	n/a
2	TCF12	chr16:71927822-71930235	A549	lung:	n/a	n/a
3	YY1	chr16:71928789-71929826	GM12878	blood:	n/a	chr16:71929427-71929443 chr16:71929428-71929438 chr16:71929270-71929284 chr16:71929428-71929450 chr16:71929426-71929443 chr16:71929264-71929275 chr16:71929431-71929439
4	TAF1	chr16:71928825-71929678	GM12891	blood:	n/a	n/a
5	ELF1	chr16:71928804-71930284	GM12878	blood:	n/a	chr16:71929326-71929335 chr16:71929820-71929832 chr16:71929527-71929538
6	PBX3	chr16:71928682-71929804	A549	lung:	n/a	n/a
7	JUND	chr16:71928813-71929513	HepG2	liver:	n/a	chr16:71928903-71928912 chr16:71929204-71929214 chr16:71929206-71929217 chr16:71929203-71929214 chr16:71929204-71929214 chr16:71929204-71929214 chr16:71929204-71929214
8	POLR2A	chr16:71928104-71930257	GM12878	blood:	n/a	n/a
9	SIN3AK20	chr16:71927836-71930365	MCF-7	breast:	n/a	n/a
10	TAF1	chr16:71928778-71930216	H1-neurons	neurons:	n/a	n/a
11	MYBL2	chr16:71927838-71930298	HepG2	liver:	n/a	n/a
12	BCLAF1	chr16:71928792-71929638	K562	blood:	n/a	chr16:71929006-71929015 chr16:71928905-71928914 chr16:71929246-71929255
13	TAF1	chr16:71928701-71930236	ECC-1	luminal epithelium:	n/a	n/a
14	POLR2A	chr16:71928653-71929736	SK-N-SH	brain:	n/a	n/a
15	MAX	chr16:71928692-71930193	MCF-7	breast:	n/a	n/a
16	POLR2A	chr16:71928214-71930152	GM18951	blood:	n/a	n/a
17	CEBPD	chr16:71928632-71929786	HepG2	liver:	n/a	n/a
18	CHD2	chr16:71928626-71930214	GM12878	blood:	n/a	chr16:71929163-71929173
19	NR2F2	chr16:71928677-71930404	MCF-7	breast:	n/a	chr16:71930156-71930171
20	POLR2A	chr16:71928189-71930271	GM12878	blood:	n/a	n/a
21	HEY1	chr16:71928615-71929789	HepG2	liver:	n/a	n/a
22	GABPA	chr16:71928030-71930358	MCF-7	breast:	n/a	chr16:71929165-71929174 chr16:71929394-71929403
23	EP300	chr16:71928812-71928886	GM12878	blood:	n/a	n/a
24	SIN3AK20	chr16:71928618-71929848	PANC-1	pancreas:	n/a	n/a
25	POLR2A	chr16:71928803-71929714	A549	lung:	n/a	n/a
26	TAF1	chr16:71928818-71930120	MCF-7	breast:	n/a	n/a
27	MAX	chr16:71928749-71930218	ECC-1	luminal epithelium:	n/a	n/a
28	TEAD4	chr16:71928819-71929605	ECC-1	luminal epithelium:	n/a	n/a
29	MAX	chr16:71928767-71929802	HepG2	liver:	n/a	n/a
30	GABPA	chr16:71928720-71930034	K562	blood:	n/a	chr16:71929165-71929174 chr16:71929394-71929403
31	POLR2A	chr16:71928737-71929935	PFSK-1	brain:	n/a	n/a
32	MAX	chr16:71928730-71929665	H1-hESC	embryonic stem cell:	n/a	n/a
33	POLR2A	chr16:71928782-71929627	H1-hESC	embryonic stem cell:	n/a	n/a
34	JUND	chr16:71928704-71929848	MCF-7	breast:	n/a	chr16:71928903-71928912 chr16:71929204-71929214 chr16:71929206-71929217 chr16:71929203-71929214 chr16:71929204-71929214 chr16:71929204-71929214 chr16:71929204-71929214
35	YY1	chr16:71928844-71929742	H1-hESC	embryonic stem cell:	n/a	chr16:71929427-71929443 chr16:71929428-71929438 chr16:71929270-71929284 chr16:71929428-71929450 chr16:71929426-71929443 chr16:71929264-71929275 chr16:71929431-71929439
36	MBD4	chr16:71928538-71929715	HepG2	liver:	n/a	n/a
37	RELA	chr16:71928748-71929691	GM18505	blood:	n/a	n/a
38	RELA	chr16:71928222-71929678	GM15510	blood:	n/a	n/a
39	TFAP2C	chr16:71928812-71930136	Hela-S3	cervix:	n/a	n/a
40	POLR2A	chr16:71927839-71930117	HepG2	liver:	n/a	n/a
41	UBTF	chr16:71928727-71930298	K562	blood:	n/a	n/a
42	TCF12	chr16:71928692-71929561	HepG2	liver:	n/a	n/a
43	EP300	chr16:71928796-71929707	A549	lung:	n/a	n/a
44	MAFK	chr16:71928722-71929405	HepG2	liver:	n/a	n/a
45	POLR2A	chr16:71928745-71930240	Hela-S3	cervix:	n/a	n/a
46	POLR2A	chr16:71928153-71930279	PBDE	blood:	n/a	n/a
47	TAF1	chr16:71928698-71929986	HepG2	liver:	n/a	n/a
48	POLR2A	chr16:71928194-71930157	GM18505	blood:	n/a	n/a
49	YY1	chr16:71928842-71930159	K562	blood:	n/a	chr16:71929427-71929443 chr16:71929428-71929438 chr16:71929270-71929284 chr16:71929818-71929832 chr16:71929428-71929450 chr16:71929818-71929827 chr16:71929426-71929443 chr16:71929264-71929275 chr16:71929431-71929439
50	GATA3	chr16:71928623-71930187	A549	lung:	n/a	chr16:71929206-71929215 chr16:71929203-71929210

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr16:71928811-71928861	GM06990	blood:	n/a
2	chr16:71928811-71928861	IMR90	lung:	fetal
3	chr16:71928811-71928861	Hepatocyte	liver:	n/a
4	chr16:71928811-71928861	SK-N-MC	brain:	n/a
5	chr16:71928811-71928861	NHBE	bronchial:	n/a
6	chr16:71928811-71928861	ECC-1	luminal epithelium:	n/a
7	chr16:71928811-71928861	AG04449	skin:	fetal
8	chr16:71928811-71928861	NT2-D1	testis:	n/a
9	chr16:71928811-71928861	SAEC	small airway:	n/a
10	chr16:71928811-71928861	HIPEpiC	eye:	n/a
11	chr16:71928811-71928861	HEK293	kidney:	embryo
12	chr16:71928811-71928861	CMK	blood:	n/a
13	chr16:71928811-71928861	NB4	blood:	n/a
14	chr16:71928811-71928861	SKMC	muscle:	n/a
15	chr16:71928811-71928861	GM19239	blood:	n/a
16	chr16:71928811-71928861	PrEC	prostate:	n/a
17	chr16:71928811-71928861	HAEpiC	amniotic membrane:	n/a
18	chr16:71928811-71928861	HCT-116	colon:	n/a
19	chr16:71928811-71928861	HUVEC	blood vessel:	n/a
20	chr16:71928811-71928861	ovcar-3	ovarian:	n/a
21	chr16:71928811-71928861	BJ	skin:	n/a
22	chr16:71928811-71928861	Jurkat	blood:	n/a
23	chr16:71928811-71928861	PANC-1	pancreas:	n/a
24	chr16:71928811-71928861	HNPCEpiC	eye:	n/a
25	chr16:71928811-71928861	RPTEC	kidney:	n/a
26	chr16:71928811-71928861	AoSMC	blood vessel:	n/a
27	chr16:71928811-71928861	HCM	heart:	n/a
28	chr16:71928811-71928861	MCF10A-Er-Src	breast:	n/a
29	chr16:71928811-71928861	T-47D	breast:	n/a
30	chr16:71928811-71928861	AG10803	skin:	n/a
31	chr16:71928811-71928861	AG09309	skin:	n/a
32	chr16:71928811-71928861	SK-N-SH_RA	brain:	n/a
33	chr16:71928811-71928861	HPAEpiC	pulmonary alveolar:	n/a
34	chr16:71928811-71928861	MCF-7	breast:	n/a
35	chr16:71928811-71928861	HL-60	blood:	n/a
36	chr16:71928811-71928861	PFSK-1	brain:	n/a
37	chr16:71928811-71928861	HCF	heart:	n/a
38	chr16:71928811-71928861	GM12878	blood:	n/a
39	chr16:71928811-71928861	HEEpiC	esophagus:	n/a
40	chr16:71928811-71928861	U87	brain:	n/a
41	chr16:71928811-71928861	AG09319	gingival:	n/a
42	chr16:71928811-71928861	SK-N-SH	brain:	n/a
43	chr16:71928811-71928861	GM12891	blood:	n/a
44	chr16:71928811-71928861	HepG2	liver:	n/a
45	chr16:71928811-71928861	NHDF-neo	bronchial:	n/a
46	chr16:71928811-71928861	HRCEpiC	kidney:	n/a
47	chr16:71928811-71928861	HMEC	breast:	n/a
48	chr16:71928811-71928861	H1-hESC	embryonic stem cell:	embryo
49	chr16:71928811-71928861	HRE	kidney:	n/a
50	chr16:71928811-71928861	K562	blood:	n/a

No.	Distal block	Cell Line	Cell type
1	chr16:71927209..71930992-chr16:71962077..71965660,4	K562	blood:
2	chr16:71918380..71919147-chr16:71928746..71929303,2	K562	blood:
3	chr16:71913385..71915141-chr16:71927812..71929318,2	MCF-7	breast:
4	chr16:71841145..71844669-chr16:71927071..71931411,13	MCF-7	breast:
5	chr16:71927384..71929645-chr16:71963039..71965792,3	MCF-7	breast:
6	chr16:71928455..71931068-chr16:71956099..71958859,3	MCF-7	breast:
7	chr16:71756273..71758753-chr16:71927656..71930818,3	MCF-7	breast:
8	chr16:71755635..71758602-chr16:71927230..71929480,2	MCF-7	breast:
9	chr16:71927209..71930992-chr16:71962077..71965220,3	K562	blood:
10	chr16:71923118..71926504-chr16:71927692..71930407,4	K562	blood:
11	chr16:71927590..71930855-chr16:71952254..71956665,4	MCF-7	breast:
12	chr16:71840867..71844185-chr16:71927744..71931104,8	K562	blood:
13	chr16:71916766..71921844-chr16:71926616..71932994,12	K562	blood:
14	chr16:71916483..71919796-chr16:71926616..71929598,5	K562	blood:
15	chr16:71928144..71931559-chr16:72041567..72044276,4	MCF-7	breast:
16	chr16:71841370..71844789-chr16:71927787..71931052,12	MCF-7	breast:
17	chr16:71927973..71929865-chr16:72045946..72047910,3	MCF-7	breast:
18	chr16:71927888..71929610-chr16:72042486..72044051,2	MCF-7	breast:
19	chr16:71927023..71929738-chr16:72042635..72044988,2	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-AP1G1-2	chr16:71928792-71929239	NONHSAT143527

Variant related genes	Relation type
IST1	TF binding region
IST1	CpG island
ENSG00000102984	Chromatin interaction
ENSG00000040199	Chromatin interaction
ENSG00000261513	Chromatin interaction
ENSG00000166747	Chromatin interaction
ENSG00000102967	Chromatin interaction
ENSG00000182149	Chromatin interaction
ENSG00000263320	Chromatin interaction

Extended variants
information (count: 94 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:89)

rs_ID	r²[population]
rs11075911	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11648353	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11648530	0.91[EUR][1000 genomes]
rs11649672	0.97[EUR][1000 genomes]
rs11859903	1.00[CHD][hapmap];1.00[JPT][hapmap]
rs12102548	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12444829	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12447045	0.89[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12449139	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs12599192	0.82[AFR][1000 genomes];0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12921084	0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12926041	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12926300	0.93[EUR][1000 genomes]
rs12930744	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12935795	0.82[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs13329779	1.00[EUR][1000 genomes]
rs1834034	0.91[EUR][1000 genomes]
rs1834035	0.95[CEU][hapmap];1.00[JPT][hapmap];0.97[EUR][1000 genomes]
rs1981874	1.00[CEU][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2008675	0.88[EUR][1000 genomes]
rs2018384	0.97[EUR][1000 genomes]
rs2288029	0.96[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2288031	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.94[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335709	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs2335710	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335711	0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335712	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2335713	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335714	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2335715	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs28697038	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2878492	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs3794692	0.98[EUR][1000 genomes]
rs4788446	0.81[EUR][1000 genomes]
rs4788447	0.91[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788449	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.98[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788450	0.92[YRI][hapmap]
rs4788562	0.85[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4788563	0.85[EUR][1000 genomes]
rs4788564	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788566	0.95[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788570	1.00[CEU][hapmap];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788571	0.94[AFR][1000 genomes];0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4788573	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788576	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4788579	0.92[YRI][hapmap]
rs4788581	0.97[EUR][1000 genomes]
rs4788582	0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4788584	0.91[EUR][1000 genomes]
rs4788585	1.00[CEU][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.91[EUR][1000 genomes]
rs62053803	0.91[EUR][1000 genomes]
rs6499533	1.00[JPT][hapmap]
rs6499542	0.91[CEU][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6499545	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6499551	0.99[EUR][1000 genomes]
rs6499552	1.00[EUR][1000 genomes]
rs6558	1.00[JPT][hapmap]
rs7184437	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7184486	0.92[CEU][hapmap];0.92[YRI][hapmap];0.93[AFR][1000 genomes];0.85[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7187129	0.85[AFR][1000 genomes];0.90[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7193731	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7194858	1.00[JPT][hapmap]
rs7204708	1.00[CEU][hapmap];1.00[CHD][hapmap];0.94[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.88[TSI][hapmap];0.90[EUR][1000 genomes]
rs7205154	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8044342	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8046859	0.93[EUR][1000 genomes]
rs8050488	0.89[EUR][1000 genomes]
rs8050651	1.00[CEU][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs8051038	0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs8054111	0.88[EUR][1000 genomes]
rs8054175	0.88[EUR][1000 genomes]
rs8054403	0.87[EUR][1000 genomes]
rs8057124	0.96[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[TSI][hapmap];0.97[EUR][1000 genomes]
rs8058118	0.98[EUR][1000 genomes]
rs8059053	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8062946	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8063324	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.98[LWK][hapmap];0.93[MKK][hapmap];1.00[TSI][hapmap];0.96[YRI][hapmap];0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs8063403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9302631	1.00[EUR][1000 genomes]
rs9302632	0.99[EUR][1000 genomes]
rs9806882	0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9806905	0.89[AFR][1000 genomes];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs9888748	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9889011	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9921412	1.00[CEU][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9932922	0.87[EUR][1000 genomes]
rs9934803	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9934812	0.84[AFR][1000 genomes];0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs9937936	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	nsv1056439	chr16:71916498-72051144	Strong transcription Weak transcription ZNF genes & repeats Enhancers Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
4	nsv1055854	chr16:71922144-72082886	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
5	nsv906893	chr16:71922663-71988728	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11075908	SNTB2	cis	cerebellum	SCAN
rs11075908	PSMD7	cis	parietal	SCAN

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71927600-71930400	Active TSS	Brain Inferior Temporal Lobe	brain
2	chr16:71927600-71930800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr16:71927800-71929000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr16:71927800-71929400	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:71927800-71929800	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:71927800-71930400	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr16:71927800-71930400	Active TSS	Brain Anterior Caudate	brain
8	chr16:71927800-71930400	Active TSS	Osteobl	bone
9	chr16:71927800-71930600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr16:71927800-71930600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr16:71927800-71930600	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr16:71927800-71930600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
13	chr16:71927800-71930600	Active TSS	Fetal Kidney	kidney
14	chr16:71927800-71930600	Active TSS	Rectal Mucosa Donor 29	rectum
15	chr16:71927800-71930600	Active TSS	Rectal Smooth Muscle	rectum
16	chr16:71927800-71930800	Active TSS	Breast Myoepithelial Primary Cells	Breast
17	chr16:71927800-71930800	Active TSS	NHLF	lung
18	chr16:71927800-71931000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr16:71927800-71931000	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr16:71927800-71931200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr16:71927800-71931200	Active TSS	iPS-20b Cell Line	embryonic stem cell
22	chr16:71927800-71931200	Active TSS	Pancreatic Islets	Pancreatic Islet
23	chr16:71927800-71931200	Active TSS	Right Ventricle	heart
24	chr16:71927800-71931200	Active TSS	HSMM	muscle
25	chr16:71927800-71931400	Active TSS	HUES6 Cell Line	embryonic stem cell
26	chr16:71927800-71931400	Active TSS	HUES64 Cell Line	embryonic stem cell
27	chr16:71928000-71929000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
28	chr16:71928000-71929000	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
29	chr16:71928000-71929000	Active TSS	Right Atrium	heart
30	chr16:71928000-71929400	Active TSS	Skeletal Muscle Female	skeletal muscle
31	chr16:71928000-71929600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
32	chr16:71928000-71930200	Active TSS	Pancreas	Pancrea
33	chr16:71928000-71930400	Active TSS	Primary T helper naive cells from peripheral blood	blood
34	chr16:71928000-71930400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
35	chr16:71928000-71930400	Active TSS	Primary T killer memory cells from peripheral blood	blood
36	chr16:71928000-71930400	Active TSS	Brain Angular Gyrus	brain
37	chr16:71928000-71930400	Active TSS	Brain Substantia Nigra	brain
38	chr16:71928000-71930400	Active TSS	Fetal Stomach	stomach
39	chr16:71928000-71930400	Active TSS	NHEK	skin
40	chr16:71928000-71930600	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
41	chr16:71928000-71930600	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr16:71928000-71930600	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
43	chr16:71928000-71930600	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
44	chr16:71928000-71930600	Active TSS	Brain Cingulate Gyrus	brain
45	chr16:71928000-71930600	Active TSS	Brain Hippocampus Middle	brain
46	chr16:71928000-71930600	Active TSS	Colonic Mucosa	Colon
47	chr16:71928000-71930600	Active TSS	Colon Smooth Muscle	Colon
48	chr16:71928000-71930600	Active TSS	Fetal Heart	heart
49	chr16:71928000-71930600	Active TSS	Fetal Lung	lung
50	chr16:71928000-71930600	Active TSS	Small Intestine	intestine

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