Variant report

Variant	rs6499533
Chromosome Location	chr16:71755098-71755099
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:71748955..71755873-chr16:71756069..71760101,14	MCF-7	breast:
2	chr16:71751015..71755909-chr16:71755952..71758185,6	K562	blood:

Variant related genes	Relation type
ENSG00000261513	Chromatin interaction
ENSG00000040199	Chromatin interaction

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11075908	1.00[JPT][hapmap]
rs11859797	0.82[AFR][1000 genomes]
rs11859903	1.00[JPT][hapmap];0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11861285	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11866019	0.86[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12447045	1.00[JPT][hapmap]
rs1981874	1.00[JPT][hapmap]
rs2288029	1.00[JPT][hapmap]
rs2288031	1.00[JPT][hapmap]
rs2335710	1.00[JPT][hapmap]
rs2335714	1.00[JPT][hapmap]
rs4788449	1.00[JPT][hapmap]
rs4788576	1.00[JPT][hapmap]
rs61733124	0.82[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs6499542	1.00[JPT][hapmap]
rs7186890	0.82[CEU][hapmap];1.00[JPT][hapmap];0.86[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs7194858	0.82[CEU][hapmap];1.00[JPT][hapmap];0.80[YRI][hapmap];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs7195701	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	esv1817133	chr16:71705908-71837477	ZNF genes & repeats Strong transcription Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
4	esv3313994	chr16:71753408-71755487	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	3 gene(s)	inside rSNPs	n/a
5	esv3339196	chr16:71753420-71755672	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
6	esv3496760	chr16:71753491-71755712	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
7	esv3496761	chr16:71753491-71755712	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a
8	esv8241	chr16:71753503-71755861	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS	CpG island Chromatin interactive region	9 gene(s)	inside rSNPs	n/a
9	esv3313993	chr16:71753524-71755666	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:111 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71683800-71756600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:71693000-71756400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr16:71702000-71756200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
4	chr16:71705000-71756200	Weak transcription	Colon Smooth Muscle	Colon
5	chr16:71705000-71756800	Weak transcription	Gastric	stomach
6	chr16:71710600-71756200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr16:71710600-71756400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
8	chr16:71710600-71756800	Weak transcription	Lung	lung
9	chr16:71711200-71756400	Weak transcription	K562	blood
10	chr16:71715800-71756000	Weak transcription	Brain Hippocampus Middle	brain
11	chr16:71716800-71756600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr16:71724400-71756000	Weak transcription	Dnd41	blood
13	chr16:71724400-71756200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr16:71724600-71756400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr16:71724800-71756000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr16:71725000-71756000	Weak transcription	Primary T helper cells PMA-I stimulated	--
17	chr16:71725000-71756600	Weak transcription	Left Ventricle	heart
18	chr16:71733400-71756600	Weak transcription	Aorta	Aorta
19	chr16:71733800-71756000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr16:71734000-71756400	Weak transcription	Liver	Liver
21	chr16:71734000-71756600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr16:71734000-71756600	Weak transcription	Thymus	Thymus
23	chr16:71734000-71756800	Weak transcription	Pancreas	Pancrea
24	chr16:71734200-71756200	Weak transcription	Fetal Lung	lung
25	chr16:71735000-71755800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
26	chr16:71736000-71756400	Weak transcription	Brain Substantia Nigra	brain
27	chr16:71736600-71756000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
28	chr16:71741600-71756800	Weak transcription	Small Intestine	intestine
29	chr16:71741800-71756600	Weak transcription	Psoas Muscle	Psoas
30	chr16:71742000-71755800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr16:71742000-71756000	Weak transcription	Primary B cells from cord blood	blood
32	chr16:71742000-71756000	Weak transcription	Fetal Brain Female	brain
33	chr16:71742000-71756000	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr16:71742000-71756200	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr16:71742000-71756400	Weak transcription	Stomach Smooth Muscle	stomach
36	chr16:71742000-71756600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr16:71742000-71756800	Weak transcription	Spleen	Spleen
38	chr16:71742400-71756000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
39	chr16:71742400-71756000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr16:71743600-71756400	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr16:71743800-71756200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
42	chr16:71743800-71756200	Weak transcription	NH-A	brain
43	chr16:71744000-71756000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr16:71744000-71756000	Weak transcription	Ovary	ovary
45	chr16:71744200-71755400	Weak transcription	Duodenum Mucosa	Duodenum
46	chr16:71744200-71756000	Weak transcription	Colonic Mucosa	Colon
47	chr16:71744200-71756000	Weak transcription	NHEK	skin
48	chr16:71744200-71756200	Weak transcription	HSMM	muscle
49	chr16:71744200-71756200	Weak transcription	HUVEC	blood vessel
50	chr16:71744200-71756400	Weak transcription	Adipose Nuclei	Adipose

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