Variant report

Variant	rs9924339
Chromosome Location	chr16:71859485-71859486
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs4788445	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4788446	0.93[EUR][1000 genomes]
rs6499542	0.91[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7187129	0.82[EUR][1000 genomes]
rs9927049	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
3	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr16:71851000-71859600	Weak transcription	K562	blood
5	chr16:71851000-71860400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr16:71851200-71862200	Weak transcription	Fetal Stomach	stomach
7	chr16:71851200-71866400	Weak transcription	HSMMtube	muscle
8	chr16:71852200-71861600	Weak transcription	Esophagus	oesophagus
9	chr16:71852200-71861800	Weak transcription	Fetal Muscle Leg	muscle
10	chr16:71852200-71861800	Weak transcription	HSMM	muscle
11	chr16:71852200-71866000	Weak transcription	Skeletal Muscle Male	skeletal muscle
12	chr16:71852400-71863000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr16:71852800-71864000	Weak transcription	Osteobl	bone
14	chr16:71853200-71860200	Weak transcription	GM12878-XiMat	blood
15	chr16:71854800-71861200	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr16:71856000-71861400	Weak transcription	Psoas Muscle	Psoas
17	chr16:71858000-71863400	Weak transcription	Primary T cells from cord blood	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links